HHsearch alignment for GI: 254780405 and conserved domain: TIGR02081
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=98.20 E-value=6.6e-07 Score=61.84 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=56.5
Q ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC-----CC----CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 999987763336455896786110012221001101-----68----733011100012356676420013322100223
Q gi|254780405|r 33 KALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS-----RG----CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 33 ealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS-----rG----A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
T Consensus 5 ~~I~~~Ip-------~GSRVLDLGCGdG~L-L~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~--------RGv~VI 68 (205)
T TIGR02081 5 ELILDLIP-------PGSRVLDLGCGDGEL-LALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVA--------RGVSVI 68 (205)
T ss_pred HHHHHHCC-------CCCEEEEECCCCHHH-HHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHH--------CCCCEE
T ss_conf 88986168-------887364101688789-99999743789888712000102345445999986--------252013
Q ss_pred HHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 4456654210034444310151
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiIf~D 125 (189)
T Consensus 69 q~Dld~GL~~F~D~~FD~ViLs 90 (205)
T TIGR02081 69 QGDLDEGLEAFPDKSFDYVILS 90 (205)
T ss_pred CCCCCCCCCCCCCCCCCEEEEC
T ss_conf 0060034011678876625421