HHsearch alignment for GI: 254780405 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.76 E-value=5.1e-19 Score=133.72 Aligned_cols=139 Identities=20% Similarity=0.299 Sum_probs=103.8
Q ss_pred ECCEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 0886744378888-6778589999999877633364558967861100122210011016-8733011100012356676
Q gi|254780405|r 11 FQRRLLHTPQNRS-IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIR 88 (189)
Q Consensus 11 ~kg~~l~~~~~~~-~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk 88 (189)
T Consensus 55 F~~~~f~V~~~VLIPRpETE~Lve~~l~~~~~------~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~ 128 (251)
T TIGR03534 55 FYGLDFKVSPGVLIPRPDTEELVEAALERLKK------GPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR 128 (251)
T ss_pred EEEEEEEEECCEEEECCCHHHHHHHHHHHHCC------CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 98689997188786488339999999997314------898699955671699999999679978999989879999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC---------------------------CHHHHHHHHH
Q ss_conf 4200133221002234456654210034444310151343100---------------------------0288898887
Q gi|254780405|r 89 RNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQG---------------------------LAQQALAIID 141 (189)
Q Consensus 89 ~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~---------------------------~~~~~l~~l~ 141 (189)
T Consensus 129 ~N~~~~~~~-~v~~~~~d~~~~~~---~~~fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a- 203 (251)
T TIGR03534 129 KNAKRLGLE-NVRFLKSDWFEPLP---GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQA- 203 (251)
T ss_pred HHHHHCCCC-EEEEEECCHHHCCC---CCCCCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHH-
T ss_conf 999980998-26865131432156---8986689978998874566632860102672999717984699999999999-
Q ss_pred HCCCCCCCEEEEEECCCCCC
Q ss_conf 44888897499998177888
Q gi|254780405|r 142 KEGWLEPNALVIIEEYAGTC 161 (189)
Q Consensus 142 ~~~~L~~~gliiiE~~~~~~ 161 (189)
T Consensus 204 -~~~L~~~G~l~~Eig~~q~ 222 (251)
T TIGR03534 204 -PRYLKPGGWLLLEIGYDQG 222 (251)
T ss_pred -HHHCCCCCEEEEEECHHHH
T ss_conf -9853679889999683789