HHsearch alignment for GI: 254780405 and conserved domain: cd00315
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.24 E-value=3.5e-07 Score=63.48 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=54.6
Q ss_pred EEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 786110012221001101687330111000123566764200133221002234456654210034444310151343
Q gi|254780405|r 51 RMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPY 128 (189)
Q Consensus 51 ~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY 128 (189)
T Consensus 2 ~v~dLFsG~GG~s~Gl~~aG~~~~~a~e~d~~a~~t~~~N~~~-------~~~~~Di~~~~~~~~~~~vDll~ggpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred CEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC-------CCCCCCHHHCCCCCCCCCCCEEEECCCC
T ss_conf 5999767807899999986998999996899999999988799-------9525886446532137887889868999