HHsearch alignment for GI: 254780405 and conserved domain: pfam01170
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=99.52 E-value=1.9e-14 Score=106.52 Aligned_cols=103 Identities=23% Similarity=0.276 Sum_probs=79.7
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 89678611001222100110168733-01110001235667642001332210022344566542100344443101513
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHY-VLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~-v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
T Consensus 28 ~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~--~~~~~~d~Iv~nP 105 (171)
T pfam01170 28 PGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLP--LLNGSVDTIVTDP 105 (171)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCC--CCCCCCEEEEECC
T ss_conf 99978868998789999999961358953675879999999999998289984699976665387--9878831899889
Q ss_pred HHHHC---------CHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 43100---------02888988874488889749999
Q gi|254780405|r 127 PYGQG---------LAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 127 PY~~~---------~~~~~l~~l~~~~~L~~~gliii 154 (189)
T Consensus 106 PYG~r~~~~~~~~~ly~~~~~~~~~--~~~g~~~~i~ 140 (171)
T pfam01170 106 PYGIRIGSKGALEKLYPAFLDEAKR--VLRGRLVFAT 140 (171)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCEEEEE
T ss_conf 8201136545699999999999998--6899789999