HHsearch alignment for GI: 254780405 and conserved domain: pfam01861

>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.

Probab=97.92  E-value=5.4e-06  Score=56.43  Aligned_cols=101  Identities=20%  Similarity=0.220  Sum_probs=74.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC-CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             867785899999998776333645589678611001-2221001101687330111000123566764200133221002
Q gi|254780405|r   23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAG-TGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCN  101 (189)
Q Consensus        23 ~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaG-sG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~  101 (189)
T Consensus        24 ~~T~ET~v~Ra~l~--~~r---gdL~Gk~iL~vGDDDLtSlA~-al~~~p~~I~VvDIDeRll~fI~~~A~~~gl--~i~   95 (243)
T pfam01861        24 FVTPETTVARVALM--YSR---GDLEGKEILVLGDDDLTSLAA-ALTGLPKRIAVVDIDERLIKFIERVAKEEGL--KIE   95 (243)
T ss_pred             CCCHHHHHHHHHHH--HHC---CCCCCCEEEEECCCCHHHHHH-HHCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CEE
T ss_conf             31628899999999--873---885798799972861878999-9648985489996758999999999997499--716


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHC
Q ss_conf             234456654210034444310151343100
Q gi|254780405|r  102 IFFRDVLRLGKIGNISPFQLVYLDPPYGQG  131 (189)
Q Consensus       102 ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~  131 (189)
T Consensus        96 ~~~~DlR~pLP~~l~~~FD~f~TDPPyT~~  125 (243)
T pfam01861        96 AFVHDLRNPLPEDLKHKFDVFITDPPETVD  125 (243)
T ss_pred             EEEECCCCCCCHHHHCCCCEEECCCCCCHH
T ss_conf             887410148999996167989718998778