HHsearch alignment for GI: 254780405 and conserved domain: pfam03059
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=95.68 E-value=0.013 Score=36.43 Aligned_cols=128 Identities=14% Similarity=0.186 Sum_probs=79.7
Q ss_pred CCCCCCCCHHHHH---CCCCCCHH--HHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 1001222100110---16873301--11000123566764200133-221002234456654210034444310151343
Q gi|254780405|r 55 IFAGTGSVGFEAL---SRGCHYVL--FVDNNSESIRLIRRNSELLG-VEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPY 128 (189)
Q Consensus 55 lfaGsG~lgiEal---SrGA~~v~--~vE~~~~a~~~lk~N~~~~~-~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY 128 (189)
T Consensus 126 AFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~--~~l~~~DvV~lAALV 203 (277)
T pfam03059 126 AFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVT--TELKAYDVVFLAALV 203 (277)
T ss_pred EEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCC--CCCCCCCEEEEHHHC
T ss_conf 996378861389999885088731433127889999999999865530047289952644444--444547689872113
Q ss_pred H--HCCHHHHHHHHHHCCCCCCCEEEEEECCCC--C------CCCCCCCCEEEEE-EECCCE--EEEEEEC
Q ss_conf 1--000288898887448888974999981778--8------8675788579998-341856--9998650
Q gi|254780405|r 129 G--QGLAQQALAIIDKEGWLEPNALVIIEEYAG--T------CISVGAAFHFLQE-RKYGDT--KIYFFSY 186 (189)
Q Consensus 129 ~--~~~~~~~l~~l~~~~~L~~~gliiiE~~~~--~------~~~~~~~~~~~~~-k~yG~t--~i~f~~~ 186 (189)
T Consensus 204 Gm~~e~K~~I~~hL~k--~m~~Ga~l~~Rsa~GlR~~LYp~vd~~~~~GFe~l~~~hP~~~ViNSvI~~rk 272 (277)
T pfam03059 204 GMDKEEKAKVIDHLGK--HMAPGALLVLRSAHGARAFLYPVVDPCDLRGFEVLSVYHPTDEVINSVIVARK 272 (277)
T ss_pred CCCHHHHHHHHHHHHH--HCCCCCEEEEECCHHHHHHCCCCCCHHHCCCCEEEEEECCCCCCEEEEEEEEC
T ss_conf 5433359999999997--45899679996112178762887896673870799998899984113899833