HHsearch alignment for GI: 254780405 and conserved domain: pfam03602

>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=100.00  E-value=0  Score=380.44  Aligned_cols=179  Identities=39%  Similarity=0.786  Sum_probs=160.7

Q ss_pred             EEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             19986410886744378888677858999999987763336455896786110012221001101687330111000123
Q gi|254780405|r    4 IRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSES   83 (189)
Q Consensus         4 mrii~G~~kg~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a   83 (189)
T Consensus         1 mRIisG~~kgr~l~~p~~~~~RPT~~rvrEalFniL~~~~--~i~~~~~LDLFaGSGslglEAlSRGA~~v~fvE~~~~a   78 (181)
T pfam03602         1 MRIIGGKYKGRKLKVPPGPGTRPTTDRVREALFNILAPYF--ELGGARVLDLFAGSGALGLEALSRGASSVVFVEKDKKA   78 (181)
T ss_pred             CEEECCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHH
T ss_conf             9894524789882579999957684889999997501345--54898799827872698999997699889999699999


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
Q ss_conf             566764200133221002234456654210-0344443101513431000288898887448888974999981778886
Q gi|254780405|r   84 IRLIRRNSELLGVEKNCNIFFRDVLRLGKI-GNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCI  162 (189)
Q Consensus        84 ~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~-~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~  162 (189)
T Consensus        79 ~~~i~~N~~~l~~~~~-~~~~~~~~~~~~~~~~~~~fdiIF~DPPY~~~~~~~~l~~l~~~~~l~~~~iiiiE~~~~~~~  157 (181)
T pfam03602        79 VATLKENLEALGLEGA-VLRMDAARALLRLAGKGPPFDLVFLDPPYAKGLIEEALELLAEKGWLNPNALIVVETESDEEL  157 (181)
T ss_pred             HHHHHHHHHHHCCCCE-EEECCHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
T ss_conf             9999999998589977-998108999987533578887663599754206999999999666657980999996687786


Q ss_pred             -CCCCCCEEEEEEECCCEEEEEEE
Q ss_conf             -75788579998341856999865
Q gi|254780405|r  163 -SVGAAFHFLQERKYGDTKIYFFS  185 (189)
Q Consensus       163 -~~~~~~~~~~~k~yG~t~i~f~~  185 (189)
T Consensus       158 ~~~~~~~~~~k~k~YG~t~i~f~k  181 (181)
T pfam03602       158 PEQPANLELVREKKYGQTKLAFYK  181 (181)
T ss_pred             CCCCCCEEEEEEEECCCEEEEEEC
T ss_conf             668987089999944989999969