HHsearch alignment for GI: 254780405 and conserved domain: pfam04445

>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.

Probab=98.29  E-value=2.2e-07  Score=64.72  Aligned_cols=78  Identities=23%  Similarity=0.318  Sum_probs=63.8

Q ss_pred             CEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             6786110012221001101687330111000123566764200133--------22100223445665421003444431
Q gi|254780405|r   50 TRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLG--------VEKNCNIFFRDVLRLGKIGNISPFQL  121 (189)
Q Consensus        50 ~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~--------~~~~~~ii~~D~~~~~~~~~~~~fDi  121 (189)
T Consensus        77 p~VlDATAGLG~DafiLAsLG~-~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~~~l~~~-~~~~Dv  154 (235)
T pfam04445        77 PTVLDATAGLGRDAFVLASLGC-RVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSADQLEPN-IDQPDV  154 (235)
T ss_pred             CEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHC-CCCCCE
T ss_conf             8389878775788999981899-69999788999999999999987481557999962899838879997524-689878


Q ss_pred             CCCCHHHH
Q ss_conf             01513431
Q gi|254780405|r  122 VYLDPPYG  129 (189)
Q Consensus       122 If~DPPY~  129 (189)
T Consensus       155 IYLDPMFP  162 (235)
T pfam04445       155 VYLDPMYP  162 (235)
T ss_pred             EEECCCCC
T ss_conf             99737688