HHsearch alignment for GI: 254780405 and conserved domain: pfam06962
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=94.11 E-value=0.031 Score=34.12 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH---HHHHC----CHHHHHHHHHHC-C
Q ss_conf 301110001235667642001332210022344566542100344443101513---43100----028889888744-8
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP---PYGQG----LAQQALAIIDKE-G 144 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP---PY~~~----~~~~~l~~l~~~-~ 144 (189)
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~FNLGYLPggDk~i~T~~~tTi~Al~~al~ 80 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAIFNLGYLPGGDKSITTKPDTTLEAIKKLLE 80 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 95799609999999999999659875689997798889863764676689996676889998758777209999999999
Q ss_pred CCCCCEEEEEE
Q ss_conf 88897499998
Q gi|254780405|r 145 WLEPNALVIIE 155 (189)
Q Consensus 145 ~L~~~gliiiE 155 (189)
T Consensus 81 lL~~gG~i~i~ 91 (140)
T pfam06962 81 LLKPGGLIILV 91 (140)
T ss_pred HHCCCCEEEEE
T ss_conf 63669899999