HHsearch alignment for GI: 254780405 and conserved domain: pfam06962

>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=94.11  E-value=0.031  Score=34.12  Aligned_cols=83  Identities=18%  Similarity=0.263  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH---HHHHC----CHHHHHHHHHHC-C
Q ss_conf             301110001235667642001332210022344566542100344443101513---43100----028889888744-8
Q gi|254780405|r   73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP---PYGQG----LAQQALAIIDKE-G  144 (189)
Q Consensus        73 ~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP---PY~~~----~~~~~l~~l~~~-~  144 (189)
T Consensus         1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~FNLGYLPggDk~i~T~~~tTi~Al~~al~   80 (140)
T pfam06962         1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAIFNLGYLPGGDKSITTKPDTTLEAIKKLLE   80 (140)
T ss_pred             CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf             95799609999999999999659875689997798889863764676689996676889998758777209999999999


Q ss_pred             CCCCCEEEEEE
Q ss_conf             88897499998
Q gi|254780405|r  145 WLEPNALVIIE  155 (189)
Q Consensus       145 ~L~~~gliiiE  155 (189)
T Consensus        81 lL~~gG~i~i~   91 (140)
T pfam06962        81 LLKPGGLIILV   91 (140)
T ss_pred             HHCCCCEEEEE
T ss_conf             63669899999