HHsearch alignment for GI: 254780405 and conserved domain: pfam09243
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=96.53 E-value=0.0082 Score=37.55 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=51.8
Q ss_pred HHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99987763336455896786110012221001101--6873301110001235667642001332210022344566542
Q gi|254780405|r 34 ALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS--RGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLG 111 (189)
Q Consensus 34 alFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS--rGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~ 111 (189)
T Consensus 21 ~vl~Ei~~r~p-~f~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~~~~~~~-~~~~~~~~- 97 (275)
T pfam09243 21 ASLDELAERVP-QFAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIPALKHAW-RARDVIGA- 97 (275)
T ss_pred HHHHHHHHHCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCE-ECCCCCCC-
T ss_conf 99999998679-9998757772775799999999884247689997489999999999985184345431-11431011-
Q ss_pred HHCCCCCCCCCCCCHHHH
Q ss_conf 100344443101513431
Q gi|254780405|r 112 KIGNISPFQLVYLDPPYG 129 (189)
Q Consensus 112 ~~~~~~~fDiIf~DPPY~ 129 (189)
T Consensus 98 -~~~~~~~DLVi~--sy~ 112 (275)
T pfam09243 98 -ALDFEPADLVTI--SYV 112 (275)
T ss_pred -CCCCCCCCEEEE--ECH
T ss_conf -245898788996--142