HHsearch alignment for GI: 254780405 and conserved domain: pfam09243

>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=96.53  E-value=0.0082  Score=37.55  Aligned_cols=90  Identities=21%  Similarity=0.242  Sum_probs=51.8

Q ss_pred             HHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99987763336455896786110012221001101--6873301110001235667642001332210022344566542
Q gi|254780405|r   34 ALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS--RGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLG  111 (189)
Q Consensus        34 alFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS--rGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~  111 (189)
T Consensus        21 ~vl~Ei~~r~p-~f~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~~~~~~~-~~~~~~~~-   97 (275)
T pfam09243        21 ASLDELAERVP-QFAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIPALKHAW-RARDVIGA-   97 (275)
T ss_pred             HHHHHHHHHCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCE-ECCCCCCC-
T ss_conf             99999998679-9998757772775799999999884247689997489999999999985184345431-11431011-


Q ss_pred             HHCCCCCCCCCCCCHHHH
Q ss_conf             100344443101513431
Q gi|254780405|r  112 KIGNISPFQLVYLDPPYG  129 (189)
Q Consensus       112 ~~~~~~~fDiIf~DPPY~  129 (189)
T Consensus        98 -~~~~~~~DLVi~--sy~  112 (275)
T pfam09243        98 -ALDFEPADLVTI--SYV  112 (275)
T ss_pred             -CCCCCCCCEEEE--ECH
T ss_conf             -245898788996--142