HHsearch alignment for GI: 254780405 and conserved domain: smart00650
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.25 E-value=3.2e-07 Score=63.72 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
T Consensus 13 ~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~---~~n~~ii~~D~L~~~~-~~~-~~~~iv~NLP 86 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL-PKL-QPYKVVGNLP 86 (169)
T ss_pred CCCEEEEECCCHHHHHHHHHHHC-CCCCEEECCHHHHHHHHHHHCC---CCCEEEEECCHHCCCC-CCC-CCCEEEECCC
T ss_conf 94979996897029999999731-6353163788999999986410---7977999571112553-115-8736993476
Q ss_pred HHHCCHHHHHHHHHH
Q ss_conf 310002888988874
Q gi|254780405|r 128 YGQGLAQQALAIIDK 142 (189)
Q Consensus 128 Y~~~~~~~~l~~l~~ 142 (189)
T Consensus 87 Y~--Iss~il~~ll~ 99 (169)
T smart00650 87 YN--ISTPILFKLLE 99 (169)
T ss_pred CC--CHHHHHHHHHH
T ss_conf 30--11899999986