BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780405|ref|YP_003064818.1| hypothetical protein
CLIBASIA_01450 [Candidatus Liberibacter asiaticus str. psy62]
         (189 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780405|ref|YP_003064818.1| hypothetical protein CLIBASIA_01450 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 189

 Score =  390 bits (1003), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MNKIRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTG 60
           MNKIRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTG
Sbjct: 1   MNKIRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTG 60

Query: 61  SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQ 120
           SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQ
Sbjct: 61  SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQ 120

Query: 121 LVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGAAFHFLQERKYGDTK 180
           LVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGAAFHFLQERKYGDTK
Sbjct: 121 LVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGAAFHFLQERKYGDTK 180

Query: 181 IYFFSYNPV 189
           IYFFSYNPV
Sbjct: 181 IYFFSYNPV 189


>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1398

 Score = 24.3 bits (51), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 9   GKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHV 42
           G   RRL+   QN  +   D  TKK L   +TH+
Sbjct: 791 GYLSRRLVDVAQNCVVNQVDCNTKKGL--TITHI 822


>gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 420

 Score = 23.1 bits (48), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 163 SVGAAFHFLQERKYGDTKIYFF 184
           S+G A HF+ ++    + I FF
Sbjct: 156 SIGIATHFITDKHIKSSTIVFF 177


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 22.7 bits (47), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 98  KNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQG 131
           KN NI   +++ + K+  ISP Q   L+  Y  G
Sbjct: 829 KNLNIKGDEIINIRKLKTISPRQESTLEIHYSDG 862


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.143    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,679
Number of Sequences: 1233
Number of extensions: 5199
Number of successful extensions: 13
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 189
length of database: 328,796
effective HSP length: 69
effective length of query: 120
effective length of database: 243,719
effective search space: 29246280
effective search space used: 29246280
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 36 (18.5 bits)