HHsearch alignment for GI: 254780406 and conserved domain: PRK00020
>PRK00020 truB tRNA pseudouridine synthase B; Provisional.
Probab=98.07 E-value=8.3e-06 Score=56.38 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=92.0
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r 73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ 152 (354)
Q Consensus 73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~ 152 (354)
T Consensus 10 ~G~l~idKP~G~TS~~vv~~vkk~----l--~~kKvGH~GTLDP~AtGvLiv~vG~--aTKl~~~~~~~~K~Y~a~i~lG 81 (244)
T PRK00020 10 DGVLLLDKPVGLSSNHALQRAKRT----V--DAAKAGHTGTLDPFATGLLVCCMGR--ATKISGRMLEADKTYQATLQFG 81 (244)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEECH--HHHHHHHHCCCCCEEEEEEEEC
T ss_conf 779997169989989999999998----2--9871577866797551418999673--7676597668992799999978
Q ss_pred ----------------------CCHHHHHHHHHHHH--------------CCCE------------EEECCC-----EEE
Q ss_conf ----------------------56467888740000--------------0876------------750343-----036
Q gi|254780406|r 153 ----------------------VDQDKLNLLKKGIV--------------IQGI------------CYGDMQ-----VTL 179 (354)
Q Consensus 153 ----------------------~~~~~~~~~~~g~~--------------~~~~------------~~~~~~-----~~~ 179 (354)
T Consensus 82 ~~TdT~D~eG~v~~~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySA~Kv~GkrlY~lAR~G~~v~~~~R~v~I~~iel 161 (244)
T PRK00020 82 EETDSGDLTGHIVARAPDGFAGVEEAALRDVLSRFVGTIEQIPPMYSALKRDGKPLYEYARAGIELDRPPRQVTIRHIEL 161 (244)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHCCCEECCCCEEEEEEEEEE
T ss_conf 76677676551564146767888999999999971686501498899756235428999977963214754899999999
Q ss_pred EECCCCEEEEEEEEEECCHHHHHHHHHHCCC------EEEEEEEEEECCEECCCCCCCCEEECCHHHHHHHH
Q ss_conf 4026880799999951842899999998398------68688975870545187554748867999998753
Q gi|254780406|r 180 DTQKGSNAWVTVGLREGKNREIKKVFEFFNW------KVNRLIRISYGPFQLGTLLAGSTREVSKKILREQL 245 (354)
Q Consensus 180 ~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~------~V~~L~Rv~~G~~~l~~L~~G~~r~l~~~e~~~l~ 245 (354)
T Consensus 162 l~~~~~~~~~~v~cSkGTY--IRSLa~Dig~~Lg~~a~l~~L~Rt~~G~f~l~~a-------i~ld~l~~~~ 224 (244)
T PRK00020 162 LSFSGMQAQIDVACSKGTY--IRTLAQDIGRALGCHAHLAALRRTHVGPFSLDRA-------VTLEALQAMP 224 (244)
T ss_pred EEECCCEEEEEEEECCCEE--EHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHC-------CCHHHHHHCC
T ss_conf 8732886899999769668--1638999999859957986749526747087986-------7899998473