HHsearch alignment for GI: 254780406 and conserved domain: PRK00130
>PRK00130 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.92 E-value=5e-05 Score=51.49 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=86.8
Q ss_pred EEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC-
Q ss_conf 8960278751563144333364421011023432002665543323202223676410001234457404775211245-
Q gi|254780406|r 74 RLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ- 152 (354)
Q Consensus 74 ~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~- 152 (354)
T Consensus 3 G~l~i~KP~g~TS~~vv~~vkk~------l~~kKvGH~GTLDP~AtGvL~v~~G~--aTK~~~~~~~~~K~Y~a~~~lG~ 74 (289)
T PRK00130 3 GVINVYKPKGMTSFDVVRKIRKI------AKIKKVGHTGTLDPLASGVLPVCLGK--ATKIVDYIMEGKKVYRVELKLGT 74 (289)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH------HCCCCCCCCCCCCCCCCCEEEEEECH--HHHHHHHHCCCCEEEEEEEEECC
T ss_conf 79996089999989999999998------48885577846798560428999787--76143676799907999999787
Q ss_pred ------------------CCHHHHHHHHHHH-----------------------------HCCCEEEECC---CEEEEEC
Q ss_conf ------------------5646788874000-----------------------------0087675034---3036402
Q gi|254780406|r 153 ------------------VDQDKLNLLKKGI-----------------------------VIQGICYGDM---QVTLDTQ 182 (354)
Q Consensus 153 ------------------~~~~~~~~~~~g~-----------------------------~~~~~~~~~~---~~~~~~~ 182 (354)
T Consensus 75 ~TdT~D~~G~i~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~~SA~Kv~GkrlY~lAR~G~~ve~-~~R~v~I~~i~l~~~ 153 (289)
T PRK00130 75 TTDTYDREGEVLEEKEVSITEDEVEEAINSFIGEIDQVPPMYSALKINGVRLYELARKGIEVER-EARKITIYDICILSI 153 (289)
T ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHCCCCCCC-CCEEEEEEEEEEECC
T ss_conf 5776546797876458998999999999975682625288789624159869999975875566-856999999998407
Q ss_pred CCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf 688079999995184289999999839------868688975870545187
Q gi|254780406|r 183 KGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 183 ~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 154 ~~~~~~~~v~CSkGTY--IRsLa~Dig~~Lg~~a~l~~L~Rt~vG~f~~~~ 202 (289)
T PRK00130 154 DLPYVIFDVKCSKGTY--IRSLCYDIGEKLNVGATMWNLERLETGPFNIEE 202 (289)
T ss_pred CCCEEEEEEEECCCEE--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf 8996999999779557--799999999976984798664965786718899