HHsearch alignment for GI: 254780406 and conserved domain: PRK00130

>PRK00130 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.92  E-value=5e-05  Score=51.49  Aligned_cols=143  Identities=17%  Similarity=0.167  Sum_probs=86.8

Q ss_pred             EEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC-
Q ss_conf             8960278751563144333364421011023432002665543323202223676410001234457404775211245-
Q gi|254780406|r   74 RLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ-  152 (354)
Q Consensus        74 ~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~-  152 (354)
T Consensus         3 G~l~i~KP~g~TS~~vv~~vkk~------l~~kKvGH~GTLDP~AtGvL~v~~G~--aTK~~~~~~~~~K~Y~a~~~lG~   74 (289)
T PRK00130          3 GVINVYKPKGMTSFDVVRKIRKI------AKIKKVGHTGTLDPLASGVLPVCLGK--ATKIVDYIMEGKKVYRVELKLGT   74 (289)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH------HCCCCCCCCCCCCCCCCCEEEEEECH--HHHHHHHHCCCCEEEEEEEEECC
T ss_conf             79996089999989999999998------48885577846798560428999787--76143676799907999999787


Q ss_pred             ------------------CCHHHHHHHHHHH-----------------------------HCCCEEEECC---CEEEEEC
Q ss_conf             ------------------5646788874000-----------------------------0087675034---3036402
Q gi|254780406|r  153 ------------------VDQDKLNLLKKGI-----------------------------VIQGICYGDM---QVTLDTQ  182 (354)
Q Consensus       153 ------------------~~~~~~~~~~~g~-----------------------------~~~~~~~~~~---~~~~~~~  182 (354)
T Consensus        75 ~TdT~D~~G~i~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~~SA~Kv~GkrlY~lAR~G~~ve~-~~R~v~I~~i~l~~~  153 (289)
T PRK00130         75 TTDTYDREGEVLEEKEVSITEDEVEEAINSFIGEIDQVPPMYSALKINGVRLYELARKGIEVER-EARKITIYDICILSI  153 (289)
T ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHCCCCCCC-CCEEEEEEEEEEECC
T ss_conf             5776546797876458998999999999975682625288789624159869999975875566-856999999998407


Q ss_pred             CCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf             688079999995184289999999839------868688975870545187
Q gi|254780406|r  183 KGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT  227 (354)
Q Consensus       183 ~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~  227 (354)
T Consensus       154 ~~~~~~~~v~CSkGTY--IRsLa~Dig~~Lg~~a~l~~L~Rt~vG~f~~~~  202 (289)
T PRK00130        154 DLPYVIFDVKCSKGTY--IRSLCYDIGEKLNVGATMWNLERLETGPFNIEE  202 (289)
T ss_pred             CCCEEEEEEEECCCEE--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf             8996999999779557--799999999976984798664965786718899