HHsearch alignment for GI: 254780406 and conserved domain: PRK00989
>PRK00989 truB tRNA pseudouridine synthase B; Provisional.
Probab=98.01 E-value=3.4e-05 Score=52.51 Aligned_cols=146 Identities=12% Similarity=0.028 Sum_probs=80.6
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r 73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ 152 (354)
Q Consensus 73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~ 152 (354)
T Consensus 9 ~GillidKP~G~TS~~vv~~vkk~----l--~~kKvGH~GTLDP~AtGvLiv~iG~-~~Tkl~~~~~~~~K~Y~a~i~lG 81 (235)
T PRK00989 9 EGILLVDKPQGRTSFSLIRALTKL----I--GVKKIGHAGTLDPFATGVMVMLIGR-KFTRLSDILLFEDKEYAAIAHLG 81 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEECCC-CCCCHHHHHCCCCCEEEEEEEEC
T ss_conf 819999789999989999999998----5--8774687867797443528884074-51127898675784699999989
Q ss_pred -------------------CCHHHHHHHHHHHHCCCEEEEC--------------------------C----CEEEEECC
Q ss_conf -------------------5646788874000008767503--------------------------4----30364026
Q gi|254780406|r 153 -------------------VDQDKLNLLKKGIVIQGICYGD--------------------------M----QVTLDTQK 183 (354)
Q Consensus 153 -------------------~~~~~~~~~~~g~~~~~~~~~~--------------------------~----~~~~~~~~ 183 (354)
T Consensus 82 ~~TdT~D~eG~i~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAiKv~Gkr~Y~lAR~g~~ve~~~r~v~I~~~l~~~~ 161 (235)
T PRK00989 82 TTTDSYDCDGKVVGRSKKIPTLEEVLEAASYFQGEIQQVPPMFSAKKVQGKKLYEYARQGLSIERRHSTVQVHLQITKYE 161 (235)
T ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCEEEEECCCCHHHHHHCCCEECCCCEEEEEEEEEEECC
T ss_conf 84777666785532148899999999999973387314188620588847068999867860115745899999997425
Q ss_pred CCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf 88079999995184289999999839------868688975870545187
Q gi|254780406|r 184 GSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 184 ~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 162 ~~~~~~~v~cSkGTY--IRSLa~Dig~~Lg~~a~l~~L~Rt~~G~f~l~~ 209 (235)
T PRK00989 162 YPLLHFVVQCSKGTY--IRSIAHELGTMLGCGAYLEELRRLRSGSFSIDQ 209 (235)
T ss_pred CCEEEEEEEECCCCC--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf 882899999899356--999999999986984898551864683838899