HHsearch alignment for GI: 254780406 and conserved domain: PRK00989

>PRK00989 truB tRNA pseudouridine synthase B; Provisional.
Probab=98.01  E-value=3.4e-05  Score=52.51  Aligned_cols=146  Identities=12%  Similarity=0.028  Sum_probs=80.6

Q ss_pred             EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r   73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ  152 (354)
Q Consensus        73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~  152 (354)
T Consensus         9 ~GillidKP~G~TS~~vv~~vkk~----l--~~kKvGH~GTLDP~AtGvLiv~iG~-~~Tkl~~~~~~~~K~Y~a~i~lG   81 (235)
T PRK00989          9 EGILLVDKPQGRTSFSLIRALTKL----I--GVKKIGHAGTLDPFATGVMVMLIGR-KFTRLSDILLFEDKEYAAIAHLG   81 (235)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEECCC-CCCCHHHHHCCCCCEEEEEEEEC
T ss_conf             819999789999989999999998----5--8774687867797443528884074-51127898675784699999989


Q ss_pred             -------------------CCHHHHHHHHHHHHCCCEEEEC--------------------------C----CEEEEECC
Q ss_conf             -------------------5646788874000008767503--------------------------4----30364026
Q gi|254780406|r  153 -------------------VDQDKLNLLKKGIVIQGICYGD--------------------------M----QVTLDTQK  183 (354)
Q Consensus       153 -------------------~~~~~~~~~~~g~~~~~~~~~~--------------------------~----~~~~~~~~  183 (354)
T Consensus        82 ~~TdT~D~eG~i~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAiKv~Gkr~Y~lAR~g~~ve~~~r~v~I~~~l~~~~  161 (235)
T PRK00989         82 TTTDSYDCDGKVVGRSKKIPTLEEVLEAASYFQGEIQQVPPMFSAKKVQGKKLYEYARQGLSIERRHSTVQVHLQITKYE  161 (235)
T ss_pred             CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCEEEEECCCCHHHHHHCCCEECCCCEEEEEEEEEEECC
T ss_conf             84777666785532148899999999999973387314188620588847068999867860115745899999997425


Q ss_pred             CCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf             88079999995184289999999839------868688975870545187
Q gi|254780406|r  184 GSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT  227 (354)
Q Consensus       184 ~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~  227 (354)
T Consensus       162 ~~~~~~~v~cSkGTY--IRSLa~Dig~~Lg~~a~l~~L~Rt~~G~f~l~~  209 (235)
T PRK00989        162 YPLLHFVVQCSKGTY--IRSIAHELGTMLGCGAYLEELRRLRSGSFSIDQ  209 (235)
T ss_pred             CCEEEEEEEECCCCC--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf             882899999899356--999999999986984898551864683838899