HHsearch alignment for GI: 254780406 and conserved domain: PRK02484
>PRK02484 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.58 E-value=0.00027 Score=46.90 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=82.7
Q ss_pred EEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC--
Q ss_conf 896027875156314433336442101102343200266554332320222367641000123445740477521124--
Q gi|254780406|r 74 RLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG-- 151 (354)
Q Consensus 74 ~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~-- 151 (354)
T Consensus 4 G~l~vdKP~G~TS~~vv~~ikk~~------~~kKvGH~GTLDP~AtGvL~v~~G~--aTkl~~~~~~~~K~Y~~~~~lG~ 75 (293)
T PRK02484 4 GIINLKKEAGMTSHDAVFKLRKIL------QTKKIGHGGTLDPDVVGVLPIAVGK--ATRVIEYMTEAGKVYEGEVTLGY 75 (293)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH------CCCCCCCCCCCCCCCEEEEEEEECH--HHHHHHHHCCCCCEEEEEEEECC
T ss_conf 699972699999899999999984------8985565836798661268999788--77151876648938999999433
Q ss_pred -------------------CCCHHHHHHHHHHH--------------HCCCE--------------EEECCCEEEE----
Q ss_conf -------------------55646788874000--------------00876--------------7503430364----
Q gi|254780406|r 152 -------------------QVDQDKLNLLKKGI--------------VIQGI--------------CYGDMQVTLD---- 180 (354)
Q Consensus 152 -------------------~~~~~~~~~~~~g~--------------~~~~~--------------~~~~~~~~~~---- 180 (354)
T Consensus 76 ~TdT~D~~G~ii~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAiKv~Gkr~Y~lAR~g~~ve~~~R~v~I~~~~l~~ 155 (293)
T PRK02484 76 STTTEDASGEVVARTPVPAVLTEELVDQAMTSFTGKITQIPPMYSAVKVNGRKLYEYARAGEEVERPRRQVTISQFERTS 155 (293)
T ss_pred CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEEEEECC
T ss_conf 25666788866763477789999999999986874067659768962215567999987797034687789999988225
Q ss_pred --ECCCC--EEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf --02688--079999995184289999999839------868688975870545187
Q gi|254780406|r 181 --TQKGS--NAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 181 --~~~~~--~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 156 ~~~~~~~~~~~~~~v~CSkGTY--IRsLa~Dlg~~Lg~~a~~~~LrRt~~G~F~~~~ 210 (293)
T PRK02484 156 PLNFEDGLCRFSFKVACSKGTY--VRTLAVDLGRKLGYASHMSFLQRTASAGLTLED 210 (293)
T ss_pred CCCCCCCCCEEEEEEEECCCEE--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf 3335677506999999767447--389999999985993798563976785838798