HHsearch alignment for GI: 254780406 and conserved domain: PRK02484

>PRK02484 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.58  E-value=0.00027  Score=46.90  Aligned_cols=144  Identities=13%  Similarity=0.083  Sum_probs=82.7

Q ss_pred             EEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC--
Q ss_conf             896027875156314433336442101102343200266554332320222367641000123445740477521124--
Q gi|254780406|r   74 RLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG--  151 (354)
Q Consensus        74 ~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~--  151 (354)
T Consensus         4 G~l~vdKP~G~TS~~vv~~ikk~~------~~kKvGH~GTLDP~AtGvL~v~~G~--aTkl~~~~~~~~K~Y~~~~~lG~   75 (293)
T PRK02484          4 GIINLKKEAGMTSHDAVFKLRKIL------QTKKIGHGGTLDPDVVGVLPIAVGK--ATRVIEYMTEAGKVYEGEVTLGY   75 (293)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH------CCCCCCCCCCCCCCCEEEEEEEECH--HHHHHHHHCCCCCEEEEEEEECC
T ss_conf             699972699999899999999984------8985565836798661268999788--77151876648938999999433


Q ss_pred             -------------------CCCHHHHHHHHHHH--------------HCCCE--------------EEECCCEEEE----
Q ss_conf             -------------------55646788874000--------------00876--------------7503430364----
Q gi|254780406|r  152 -------------------QVDQDKLNLLKKGI--------------VIQGI--------------CYGDMQVTLD----  180 (354)
Q Consensus       152 -------------------~~~~~~~~~~~~g~--------------~~~~~--------------~~~~~~~~~~----  180 (354)
T Consensus        76 ~TdT~D~~G~ii~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAiKv~Gkr~Y~lAR~g~~ve~~~R~v~I~~~~l~~  155 (293)
T PRK02484         76 STTTEDASGEVVARTPVPAVLTEELVDQAMTSFTGKITQIPPMYSAVKVNGRKLYEYARAGEEVERPRRQVTISQFERTS  155 (293)
T ss_pred             CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEEEEECC
T ss_conf             25666788866763477789999999999986874067659768962215567999987797034687789999988225


Q ss_pred             --ECCCC--EEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf             --02688--079999995184289999999839------868688975870545187
Q gi|254780406|r  181 --TQKGS--NAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT  227 (354)
Q Consensus       181 --~~~~~--~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~  227 (354)
T Consensus       156 ~~~~~~~~~~~~~~v~CSkGTY--IRsLa~Dlg~~Lg~~a~~~~LrRt~~G~F~~~~  210 (293)
T PRK02484        156 PLNFEDGLCRFSFKVACSKGTY--VRTLAVDLGRKLGYASHMSFLQRTASAGLTLED  210 (293)
T ss_pred             CCCCCCCCCEEEEEEEECCCEE--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf             3335677506999999767447--389999999985993798563976785838798