HHsearch alignment for GI: 254780406 and conserved domain: PRK02755

>PRK02755 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.56  E-value=0.00059  Score=44.73  Aligned_cols=144  Identities=18%  Similarity=0.161  Sum_probs=78.3

Q ss_pred             EEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC---
Q ss_conf             96027875156314433336442101102343200266554332320222367641000123445740477521124---
Q gi|254780406|r   75 LWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG---  151 (354)
Q Consensus        75 ~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~---  151 (354)
T Consensus         4 ~l~i~Kp~G~tS~~vv~~~k~----~~--~~kKvGH~GTLDP~AtGvL~i~~G~--aTk~~~~l~~-~K~Y~~~~~lG~~   74 (291)
T PRK02755          4 FLNLNKPAGWTSHDCVAKLRR----LL--RLKRVGHGGTLDPAATGVLPIAVGK--ATRLLPYLPS-GKAYKATVRFGLQ   74 (291)
T ss_pred             EEEEECCCCCCHHHHHHHHHH----HH--CCCCCCCCCCCCCCCCCEEEEEECH--HHEECCCCCC-CCEEEEEEEECCC
T ss_conf             999835998998999999999----85--8883677857797550528999765--7664300489-9589999998974


Q ss_pred             -----------------CCCHHHHHHHHHHH--------------HCCCEE------------EECCCEEE-----EE-C
Q ss_conf             -----------------55646788874000--------------008767------------50343036-----40-2
Q gi|254780406|r  152 -----------------QVDQDKLNLLKKGI--------------VIQGIC------------YGDMQVTL-----DT-Q  182 (354)
Q Consensus       152 -----------------~~~~~~~~~~~~g~--------------~~~~~~------------~~~~~~~~-----~~-~  182 (354)
T Consensus        75 TdT~D~~G~i~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAiKv~GkrlY~lAR~G~~ve~~~R~v~I~~~~ll~~~  154 (291)
T PRK02755         75 TTTDDLTGEILASQPASHLSLAAVETALPQFLGKIEQIPPQYSAIQVEGKRLYDLARQGEAVEVPPRTVEVFSIDILDWR  154 (291)
T ss_pred             CCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC
T ss_conf             66566678711336799899999999999736826254897895101572099998669803367789999999987104


Q ss_pred             CCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf             688079999995184289999999839------868688975870545187
Q gi|254780406|r  183 KGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT  227 (354)
Q Consensus       183 ~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~  227 (354)
T Consensus       155 ~~~~~~~~~~v~CSkGTYIRsLa~Dig~~Lg~~a~l~~L~Rt~~G~f~~~~  205 (291)
T PRK02755        155 SGDFPELDVEIACGSGTYIRAIARDLGAVLGTGGTLAALIRTESSGFALED  205 (291)
T ss_pred             CCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf             677846999999768611999999998976983898574964786708798