HHsearch alignment for GI: 254780406 and conserved domain: PRK02755
>PRK02755 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.56 E-value=0.00059 Score=44.73 Aligned_cols=144 Identities=18% Similarity=0.161 Sum_probs=78.3
Q ss_pred EEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC---
Q ss_conf 96027875156314433336442101102343200266554332320222367641000123445740477521124---
Q gi|254780406|r 75 LWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG--- 151 (354)
Q Consensus 75 ~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~--- 151 (354)
T Consensus 4 ~l~i~Kp~G~tS~~vv~~~k~----~~--~~kKvGH~GTLDP~AtGvL~i~~G~--aTk~~~~l~~-~K~Y~~~~~lG~~ 74 (291)
T PRK02755 4 FLNLNKPAGWTSHDCVAKLRR----LL--RLKRVGHGGTLDPAATGVLPIAVGK--ATRLLPYLPS-GKAYKATVRFGLQ 74 (291)
T ss_pred EEEEECCCCCCHHHHHHHHHH----HH--CCCCCCCCCCCCCCCCCEEEEEECH--HHEECCCCCC-CCEEEEEEEECCC
T ss_conf 999835998998999999999----85--8883677857797550528999765--7664300489-9589999998974
Q ss_pred -----------------CCCHHHHHHHHHHH--------------HCCCEE------------EECCCEEE-----EE-C
Q ss_conf -----------------55646788874000--------------008767------------50343036-----40-2
Q gi|254780406|r 152 -----------------QVDQDKLNLLKKGI--------------VIQGIC------------YGDMQVTL-----DT-Q 182 (354)
Q Consensus 152 -----------------~~~~~~~~~~~~g~--------------~~~~~~------------~~~~~~~~-----~~-~ 182 (354)
T Consensus 75 TdT~D~~G~i~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAiKv~GkrlY~lAR~G~~ve~~~R~v~I~~~~ll~~~ 154 (291)
T PRK02755 75 TTTDDLTGEILASQPASHLSLAAVETALPQFLGKIEQIPPQYSAIQVEGKRLYDLARQGEAVEVPPRTVEVFSIDILDWR 154 (291)
T ss_pred CCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC
T ss_conf 66566678711336799899999999999736826254897895101572099998669803367789999999987104
Q ss_pred CCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf 688079999995184289999999839------868688975870545187
Q gi|254780406|r 183 KGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 183 ~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 155 ~~~~~~~~~~v~CSkGTYIRsLa~Dig~~Lg~~a~l~~L~Rt~~G~f~~~~ 205 (291)
T PRK02755 155 SGDFPELDVEIACGSGTYIRAIARDLGAVLGTGGTLAALIRTESSGFALED 205 (291)
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf 677846999999768611999999998976983898574964786708798