HHsearch alignment for GI: 254780406 and conserved domain: PRK03287
>PRK03287 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.79 E-value=0.00013 Score=48.84 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=85.4
Q ss_pred CCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 64389602787515631443333644210110234320026655433232022236764100012344574047752112
Q gi|254780406|r 71 ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFH 150 (354)
Q Consensus 71 ~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~ 150 (354)
T Consensus 7 ~~sGil~idKP~G~TS~~vv~~vk~~----~--~~kKvGH~GTLDP~AtGvL~v~~G~--aTKl~~~~~~~~K~Y~a~~~ 78 (298)
T PRK03287 7 TGSGLVVVDKPAGMTSHDVVARCRRI----F--GTRKVGHAGTLDPMATGVLVLGVER--ATKLLGHLVATDKSYTATIR 78 (298)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEECH--HHCCCHHHCCCCCEEEEEEE
T ss_conf 88789999479999989999999998----4--8983366857797460438999787--76218746557817999999
Q ss_pred C--------------------CCCHHHHHHHHHHHHCCCEEEEC----------------------------CCE---EE
Q ss_conf 4--------------------55646788874000008767503----------------------------430---36
Q gi|254780406|r 151 G--------------------QVDQDKLNLLKKGIVIQGICYGD----------------------------MQV---TL 179 (354)
Q Consensus 151 ~--------------------~~~~~~~~~~~~g~~~~~~~~~~----------------------------~~~---~~ 179 (354)
T Consensus 79 lG~~TdT~D~eG~v~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySA~Kv~GkrlY~lAR~G~~ve~~~R~v~I~~~~l 158 (298)
T PRK03287 79 LGQTTSTDDAEGEVLSSAPASHLTEEAIAAAVAALTGEIMQVPSAVSAIKVDGKRAYARVRAGEEVELPARPVTISRFEV 158 (298)
T ss_pred ECCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCHHEEEECCHHHHHHHHCCCCCCCCCEEEEEEEEEE
T ss_conf 89737776677877503679989999999999975762447077213233267989999975984205866899999999
Q ss_pred EECCCCE--EEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf 4026880--79999995184289999999839------868688975870545187
Q gi|254780406|r 180 DTQKGSN--AWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 180 ~~~~~~~--~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 159 ~~~~~~~~~~~~~~~V~CSkGTYIRSLa~Dlg~~Lg~~a~l~~LrRt~~G~f~~~~ 214 (298)
T PRK03287 159 LAVRRDDAFIDLDVEVDCSSGTYIRALARDLGAALGVGGHLTALRRTRVGPFTLDQ 214 (298)
T ss_pred EEECCCCCCCEEEEEEEECCCEEHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf 85227777510799999679646799999999976985798554855685809799