HHsearch alignment for GI: 254780406 and conserved domain: PRK03287

>PRK03287 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.79  E-value=0.00013  Score=48.84  Aligned_cols=149  Identities=15%  Similarity=0.158  Sum_probs=85.4

Q ss_pred             CCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf             64389602787515631443333644210110234320026655433232022236764100012344574047752112
Q gi|254780406|r   71 ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFH  150 (354)
Q Consensus        71 ~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~  150 (354)
T Consensus         7 ~~sGil~idKP~G~TS~~vv~~vk~~----~--~~kKvGH~GTLDP~AtGvL~v~~G~--aTKl~~~~~~~~K~Y~a~~~   78 (298)
T PRK03287          7 TGSGLVVVDKPAGMTSHDVVARCRRI----F--GTRKVGHAGTLDPMATGVLVLGVER--ATKLLGHLVATDKSYTATIR   78 (298)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEECH--HHCCCHHHCCCCCEEEEEEE
T ss_conf             88789999479999989999999998----4--8983366857797460438999787--76218746557817999999


Q ss_pred             C--------------------CCCHHHHHHHHHHHHCCCEEEEC----------------------------CCE---EE
Q ss_conf             4--------------------55646788874000008767503----------------------------430---36
Q gi|254780406|r  151 G--------------------QVDQDKLNLLKKGIVIQGICYGD----------------------------MQV---TL  179 (354)
Q Consensus       151 ~--------------------~~~~~~~~~~~~g~~~~~~~~~~----------------------------~~~---~~  179 (354)
T Consensus        79 lG~~TdT~D~eG~v~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySA~Kv~GkrlY~lAR~G~~ve~~~R~v~I~~~~l  158 (298)
T PRK03287         79 LGQTTSTDDAEGEVLSSAPASHLTEEAIAAAVAALTGEIMQVPSAVSAIKVDGKRAYARVRAGEEVELPARPVTISRFEV  158 (298)
T ss_pred             ECCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCHHEEEECCHHHHHHHHCCCCCCCCCEEEEEEEEEE
T ss_conf             89737776677877503679989999999999975762447077213233267989999975984205866899999999


Q ss_pred             EECCCCE--EEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf             4026880--79999995184289999999839------868688975870545187
Q gi|254780406|r  180 DTQKGSN--AWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT  227 (354)
Q Consensus       180 ~~~~~~~--~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~  227 (354)
T Consensus       159 ~~~~~~~~~~~~~~~V~CSkGTYIRSLa~Dlg~~Lg~~a~l~~LrRt~~G~f~~~~  214 (298)
T PRK03287        159 LAVRRDDAFIDLDVEVDCSSGTYIRALARDLGAALGVGGHLTALRRTRVGPFTLDQ  214 (298)
T ss_pred             EEECCCCCCCEEEEEEEECCCEEHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf             85227777510799999679646799999999976985798554855685809799