HHsearch alignment for GI: 254780406 and conserved domain: PRK04099
>PRK04099 truB tRNA pseudouridine synthase B; Provisional.
Probab=98.13 E-value=1.5e-05 Score=54.69 Aligned_cols=144 Identities=19% Similarity=0.181 Sum_probs=88.0
Q ss_pred EEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC--
Q ss_conf 896027875156314433336442101102343200266554332320222367641000123445740477521124--
Q gi|254780406|r 74 RLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG-- 151 (354)
Q Consensus 74 ~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~-- 151 (354)
T Consensus 3 gil~i~KP~G~TS~~vv~~vkk----~l--~~kKvGH~GTLDP~AtGvLiv~~G--~aTKl~~~l~~~~K~Y~a~i~lG~ 74 (272)
T PRK04099 3 RLFVANKPPGLSSNAFLSRLKR----KY--GVKKAGFSGTLDPFAKGVLIVAFG--QYTKLFRFLDKTPKTYKATLWLGA 74 (272)
T ss_pred EEEEEECCCCCCHHHHHHHHHH----HH--CCCCCCCCCCCCCCCCCEEEEEEC--HHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 3999618998998999999999----84--998446370569866045999988--776311766778827999999886
Q ss_pred -----------------CCCHHHHHHHHHHHHCCCEE--------------------------EECCCE-----EEEECC
Q ss_conf -----------------55646788874000008767--------------------------503430-----364026
Q gi|254780406|r 152 -----------------QVDQDKLNLLKKGIVIQGIC--------------------------YGDMQV-----TLDTQK 183 (354)
Q Consensus 152 -----------------~~~~~~~~~~~~g~~~~~~~--------------------------~~~~~~-----~~~~~~ 183 (354)
T Consensus 75 ~TdT~D~e~i~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySA~Kv~Gkr~YelAR~G~~ve~~~r~v~I~~i~ll~~~ 154 (272)
T PRK04099 75 KSPSLDIENIESIEIIKPFDLADLEKIIKSLQGEISYTPPKFSAKKINGTRAYELARKGEEFELKPIQMEIFECKILSYN 154 (272)
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEC
T ss_conf 14788745136744689999999999999777018983888996301454399998669730357579999999999612
Q ss_pred CCEEEEEEEEEECCHHHHHHHHHHCCC------EEEEEEEEEECCEECCC
Q ss_conf 880799999951842899999998398------68688975870545187
Q gi|254780406|r 184 GSNAWVTVGLREGKNREIKKVFEFFNW------KVNRLIRISYGPFQLGT 227 (354)
Q Consensus 184 ~~~~~~~v~l~eGr~~qIrr~~~~~g~------~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 155 ~p~~~f~v~cSkGTY--IRSLa~Dig~~Lg~~a~l~~L~Rt~~G~F~le~ 202 (272)
T PRK04099 155 HPFLTFEITVSEGAY--IRSYAELFAKKLGVNGTLSSLERISEGKFVYEN 202 (272)
T ss_pred CCEEEEEEEECCCCC--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf 986999999869595--889999998985991898342821681717787