HHsearch alignment for GI: 254780406 and conserved domain: PRK04270
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed.
Probab=98.18 E-value=4.4e-06 Score=58.12 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=93.3
Q ss_pred ECCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEE
Q ss_conf 92255643896027875156314433336442101102343200266554332320222367641000123445740477
Q gi|254780406|r 66 PLRKAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVY 145 (354)
Q Consensus 66 ~i~~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y 145 (354)
T Consensus 15 ~~~~~~~~Gil~idKP~G~TS~~vv~~vrk~----l--~~kKvGH~GTLDP~AtGvL~i~~G~--aTK~~~~l~~~~K~Y 86 (300)
T PRK04270 15 PIEEYINYGVVNLDKPPGPTSHEVAAWVRDI----L--GVEKAGHGGTLDPKVTGVLPVALGK--ATKVVQALLESPKEY 86 (300)
T ss_pred CHHHHHHCCEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEECH--HHHHHHHHCCCCCEE
T ss_conf 9999972999999689899989999999998----5--8884687867897462337888679--888869867589458
Q ss_pred EEEE--CCCCCHHHHHHHHHHHHCCCEEEECCC--------------EEEEECCCCEEEEEEEEEECCHHHHHHHHHHCC
Q ss_conf 5211--245564678887400000876750343--------------036402688079999995184289999999839
Q gi|254780406|r 146 RVRF--HGQVDQDKLNLLKKGIVIQGICYGDMQ--------------VTLDTQKGSNAWVTVGLREGKNREIKKVFEFFN 209 (354)
Q Consensus 146 ~v~v--~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g 209 (354)
T Consensus 87 ~~~~~l~~~~~~~~i~~~l~~f~G~i~Q~PP~~SAvKr~~R~~~I~~~~ll~~~~~~~~~~v~cskGTY--IRsL~~DiG 164 (300)
T PRK04270 87 VCVMHLHGDVPEEKIREVFKEFTGEIYQKPPLKSAVKRRLRIRTIYELEILEIDGRDVLFRVGCESGTY--IRKLCHDIG 164 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHHHCCCCCCCEEEEEEEEEEECCEEEEEEEECCCCC--HHHHHHHHH
T ss_conf 771013999999999999997785352069736640455567469999988860886999999789847--899999999
Q ss_pred ------CEEEEEEEEEECCEECCC
Q ss_conf ------868688975870545187
Q gi|254780406|r 210 ------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 210 ------~~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 165 ~~Lg~~a~m~~LrRt~~G~F~~~~ 188 (300)
T PRK04270 165 EALGTGAHMRELRRTRTGPFTEDE 188 (300)
T ss_pred HHHCCCEEEEEEEEEEECCCCHHH
T ss_conf 984986686353514783717898