HHsearch alignment for GI: 254780406 and conserved domain: PRK04642
>PRK04642 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.88 E-value=6.4e-05 Score=50.80 Aligned_cols=146 Identities=17% Similarity=0.148 Sum_probs=86.2
Q ss_pred CEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf 43896027875156314433336442101102343200266554332320222367641000123445740477521124
Q gi|254780406|r 72 RTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG 151 (354)
Q Consensus 72 ~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~ 151 (354)
T Consensus 9 m~Gil~idKP~g~TS~~vv~~vrr~----l--~~~KvGH~GTLDP~AtGvL~i~~g--~aTK~~~~~~~~~K~Y~~~~~l 80 (300)
T PRK04642 9 LHGILLLDKPAGLSSNNALQAARRL----L--RAEKGGHTGSLDPLATGLLPLCFG--EATKIAGLLLGSAKAYDAEIVL 80 (300)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEEC--HHHHHCHHHCCCCCEEEEEEEE
T ss_conf 6779997079989989999999998----6--898457685779856043789978--7651366656136643799998
Q ss_pred --------------------CCCHHHHHHHHHHHH--------------CCCE--------------EEECCC---EEEE
Q ss_conf --------------------556467888740000--------------0876--------------750343---0364
Q gi|254780406|r 152 --------------------QVDQDKLNLLKKGIV--------------IQGI--------------CYGDMQ---VTLD 180 (354)
Q Consensus 152 --------------------~~~~~~~~~~~~g~~--------------~~~~--------------~~~~~~---~~~~ 180 (354)
T Consensus 81 G~~TdT~D~~G~v~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySA~Kv~GkrlY~lAR~G~~ve~~~R~v~I~~l~ll 160 (300)
T PRK04642 81 GVTTDTDDADGQVLRERPVPDLSEAALQAALAPFIGRIQQQAPIYSALKQGGEPLYAKARRGEVIEAPVREVEVHAIEVL 160 (300)
T ss_pred CCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCHHHHHHHHCCCEEEECEEEEEEEEEEEE
T ss_conf 75136767778676405789889999999999777535652978897242882188887669703202089999999985
Q ss_pred ECCCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf 02688079999995184289999999839------868688975870545187
Q gi|254780406|r 181 TQKGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 181 ~~~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 161 ~~~~~~~~~~v~CskG--TYIRsLa~Dig~~Lg~~a~l~~LrRt~vG~f~~~~ 211 (300)
T PRK04642 161 GYAAPRLRLRVTCGSG--TYIRSLARDLGEVLGCGAHIAALRRLWVEPFRAPQ 211 (300)
T ss_pred ECCCCEEEEEEEECCC--CHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf 0369859999998870--15999999999985985797021843786808798