HHsearch alignment for GI: 254780406 and conserved domain: PRK04642

>PRK04642 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.88  E-value=6.4e-05  Score=50.80  Aligned_cols=146  Identities=17%  Similarity=0.148  Sum_probs=86.2

Q ss_pred             CEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf             43896027875156314433336442101102343200266554332320222367641000123445740477521124
Q gi|254780406|r   72 RTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG  151 (354)
Q Consensus        72 ~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~  151 (354)
T Consensus         9 m~Gil~idKP~g~TS~~vv~~vrr~----l--~~~KvGH~GTLDP~AtGvL~i~~g--~aTK~~~~~~~~~K~Y~~~~~l   80 (300)
T PRK04642          9 LHGILLLDKPAGLSSNNALQAARRL----L--RAEKGGHTGSLDPLATGLLPLCFG--EATKIAGLLLGSAKAYDAEIVL   80 (300)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEEC--HHHHHCHHHCCCCCEEEEEEEE
T ss_conf             6779997079989989999999998----6--898457685779856043789978--7651366656136643799998


Q ss_pred             --------------------CCCHHHHHHHHHHHH--------------CCCE--------------EEECCC---EEEE
Q ss_conf             --------------------556467888740000--------------0876--------------750343---0364
Q gi|254780406|r  152 --------------------QVDQDKLNLLKKGIV--------------IQGI--------------CYGDMQ---VTLD  180 (354)
Q Consensus       152 --------------------~~~~~~~~~~~~g~~--------------~~~~--------------~~~~~~---~~~~  180 (354)
T Consensus        81 G~~TdT~D~~G~v~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySA~Kv~GkrlY~lAR~G~~ve~~~R~v~I~~l~ll  160 (300)
T PRK04642         81 GVTTDTDDADGQVLRERPVPDLSEAALQAALAPFIGRIQQQAPIYSALKQGGEPLYAKARRGEVIEAPVREVEVHAIEVL  160 (300)
T ss_pred             CCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCHHHHHHHHCCCEEEECEEEEEEEEEEEE
T ss_conf             75136767778676405789889999999999777535652978897242882188887669703202089999999985


Q ss_pred             ECCCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf             02688079999995184289999999839------868688975870545187
Q gi|254780406|r  181 TQKGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT  227 (354)
Q Consensus       181 ~~~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~  227 (354)
T Consensus       161 ~~~~~~~~~~v~CskG--TYIRsLa~Dig~~Lg~~a~l~~LrRt~vG~f~~~~  211 (300)
T PRK04642        161 GYAAPRLRLRVTCGSG--TYIRSLARDLGEVLGCGAHIAALRRLWVEPFRAPQ  211 (300)
T ss_pred             ECCCCEEEEEEEECCC--CHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf             0369859999998870--15999999999985985797021843786808798