HHsearch alignment for GI: 254780406 and conserved domain: PRK05033

>PRK05033 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.93  E-value=4.5e-05  Score=51.77  Aligned_cols=145  Identities=14%  Similarity=0.133  Sum_probs=85.6

Q ss_pred             EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC-
Q ss_conf             3896027875156314433336442101102343200266554332320222367641000123445740477521124-
Q gi|254780406|r   73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG-  151 (354)
Q Consensus        73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~-  151 (354)
T Consensus        12 ~Gil~idKP~g~TS~~~v~~~kk~----~--~~kKvGH~GTLDP~AtGvL~i~~G-~-aTK~~~~~~~~~K~Y~~~~~lG   83 (314)
T PRK05033         12 NGVLLLDKPQGMSSNDALQKVKRI----Y--NANKAGHTGALDPLATGMLPICLG-E-ATKFSQFLLDSDKRYRVIAKLG   83 (314)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEEC-H-HHHHHHHHCCCCCEEEEEEEEC
T ss_conf             679998159999989999999998----5--888568785779756021899988-8-8704088668991799999978


Q ss_pred             ------------------CCCHHHHHHHHHHHHCCCEEE----------------------------ECC---CEEEEEC
Q ss_conf             ------------------556467888740000087675----------------------------034---3036402
Q gi|254780406|r  152 ------------------QVDQDKLNLLKKGIVIQGICY----------------------------GDM---QVTLDTQ  182 (354)
Q Consensus       152 ------------------~~~~~~~~~~~~g~~~~~~~~----------------------------~~~---~~~~~~~  182 (354)
T Consensus        84 ~~TdT~D~eG~i~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySA~Kv~Gkr~Y~lAR~G~~ve~~~R~v~I~~i~l~~~  163 (314)
T PRK05033         84 QRTDTSDADGQVVEERPVTFSAEQLAAALETFRGDIEQIPSMYSALKYQGKPLYEYARQGIEVPREARPITVYELLFIRH  163 (314)
T ss_pred             CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCEEECCCHHHHEEECCHHHHHHHHCCCCEEECCEEEEEEEEEEEEE
T ss_conf             86566788887720368999999999999975584524588789542578609999877984142017989989999973


Q ss_pred             CCCEEEEEEEEEECCHHHHHHHHHHC------CCEEEEEEEEEECCEECCC
Q ss_conf             68807999999518428999999983------9868688975870545187
Q gi|254780406|r  183 KGSNAWVTVGLREGKNREIKKVFEFF------NWKVNRLIRISYGPFQLGT  227 (354)
Q Consensus       183 ~~~~~~~~v~l~eGr~~qIrr~~~~~------g~~V~~L~Rv~~G~~~l~~  227 (354)
T Consensus       164 ~~~~~~~~V~CSkG--TYIRSLa~Dig~~Lg~~a~l~~LrRt~vG~f~~~~  212 (314)
T PRK05033        164 EGNELELEVHCSKG--TYIRTIIDDLGEKLGCGAHVTYLRRLAVSKYPVER  212 (314)
T ss_pred             CCCEEEEEEEECCC--CCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf             28868999997897--23589999999875983797324853586818798