HHsearch alignment for GI: 254780406 and conserved domain: PRK05033
>PRK05033 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.93 E-value=4.5e-05 Score=51.77 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=85.6
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC-
Q ss_conf 3896027875156314433336442101102343200266554332320222367641000123445740477521124-
Q gi|254780406|r 73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG- 151 (354)
Q Consensus 73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~- 151 (354)
T Consensus 12 ~Gil~idKP~g~TS~~~v~~~kk~----~--~~kKvGH~GTLDP~AtGvL~i~~G-~-aTK~~~~~~~~~K~Y~~~~~lG 83 (314)
T PRK05033 12 NGVLLLDKPQGMSSNDALQKVKRI----Y--NANKAGHTGALDPLATGMLPICLG-E-ATKFSQFLLDSDKRYRVIAKLG 83 (314)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEEC-H-HHHHHHHHCCCCCEEEEEEEEC
T ss_conf 679998159999989999999998----5--888568785779756021899988-8-8704088668991799999978
Q ss_pred ------------------CCCHHHHHHHHHHHHCCCEEE----------------------------ECC---CEEEEEC
Q ss_conf ------------------556467888740000087675----------------------------034---3036402
Q gi|254780406|r 152 ------------------QVDQDKLNLLKKGIVIQGICY----------------------------GDM---QVTLDTQ 182 (354)
Q Consensus 152 ------------------~~~~~~~~~~~~g~~~~~~~~----------------------------~~~---~~~~~~~ 182 (354)
T Consensus 84 ~~TdT~D~eG~i~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySA~Kv~Gkr~Y~lAR~G~~ve~~~R~v~I~~i~l~~~ 163 (314)
T PRK05033 84 QRTDTSDADGQVVEERPVTFSAEQLAAALETFRGDIEQIPSMYSALKYQGKPLYEYARQGIEVPREARPITVYELLFIRH 163 (314)
T ss_pred CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCEEECCCHHHHEEECCHHHHHHHHCCCCEEECCEEEEEEEEEEEEE
T ss_conf 86566788887720368999999999999975584524588789542578609999877984142017989989999973
Q ss_pred CCCEEEEEEEEEECCHHHHHHHHHHC------CCEEEEEEEEEECCEECCC
Q ss_conf 68807999999518428999999983------9868688975870545187
Q gi|254780406|r 183 KGSNAWVTVGLREGKNREIKKVFEFF------NWKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 183 ~~~~~~~~v~l~eGr~~qIrr~~~~~------g~~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 164 ~~~~~~~~V~CSkG--TYIRSLa~Dig~~Lg~~a~l~~LrRt~vG~f~~~~ 212 (314)
T PRK05033 164 EGNELELEVHCSKG--TYIRTIIDDLGEKLGCGAHVTYLRRLAVSKYPVER 212 (314)
T ss_pred CCCEEEEEEEECCC--CCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf 28868999997897--23589999999875983797324853586818798