HHsearch alignment for GI: 254780406 and conserved domain: PRK10839
>PRK10839 16S rRNA pseudouridylate synthase A; Provisional.
Probab=100.00 E-value=0 Score=474.66 Aligned_cols=227 Identities=26% Similarity=0.412 Sum_probs=208.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCCCCCEEEEECCCCCEEEECCCCCCC
Q ss_conf 44788999886877899999998698699999924068780799979999989225564389602787515631443333
Q gi|254780406|r 14 QRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAERTRLWLYHKPIGLVTTHSDPDG 93 (354)
Q Consensus 14 ~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~~~~~~~~~~~KP~g~~~~~~~~~~ 93 (354)
T Consensus 1 mRL~K~La~~g~~SRR~ae~lI~~GrV~VNg~~v~~~~~~V~~~~~v~vdg~~i~~~~~~~y~~lnKP~G~v~s~~d~~~ 80 (231)
T PRK10839 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVKNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDH 80 (231)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCCEECCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 93789998878956999999998797999999914588084999869991958614668689999899875347889999
Q ss_pred CCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEE--
Q ss_conf 644210110234320026655433232022236764100012344574047752112455646788874000008767--
Q gi|254780406|r 94 RSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGIC-- 171 (354)
Q Consensus 94 ~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~~~~~~~~~~g~~~~~~~-- 171 (354)
T Consensus 81 ~~~~~~l~~~~~~~l~~vGRLD~ds~GLlllTnDg~l~~~l~~P~~~i~k~Y~V~v~~~i~~~~l~~l~~Gv~i~~~~~~ 160 (231)
T PRK10839 81 PTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL 160 (231)
T ss_pred CCEEEECCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCEECCEECC
T ss_conf 72698637655563577004688987769976888999535187689978999998987999999999679698782311
Q ss_pred EECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEEC-CCCCCCCEEECCHHHHHHH
Q ss_conf 503430364026880799999951842899999998398686889758705451-8755474886799999875
Q gi|254780406|r 172 YGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQL-GTLLAGSTREVSKKILREQ 244 (354)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l-~~L~~G~~r~l~~~e~~~l 244 (354)
T Consensus 161 ~~~~~v~~~----~~~~~~i~l~eGk~rqIRrmf~~~g~~V~~L~Ri~iG~i~L~~dL~~G~~R~Lt~~Ei~~l 230 (231)
T PRK10839 161 TKPAVLEVI----TPTQVRLTISEGRYHQVKRMFAAVGNRVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 (231)
T ss_pred EEEEEEEEC----CCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEEEECEECCCCCCCCCEEECCHHHHHHC
T ss_conf 603699984----8969999996687679999999859989899999990552389999975019999999742