HHsearch alignment for GI: 254780406 and conserved domain: PRK11025

>PRK11025 23S rRNA pseudouridylate synthase C; Provisional.
Probab=99.96  E-value=1e-29  Score=207.01  Aligned_cols=215  Identities=16%  Similarity=0.198  Sum_probs=158.9

Q ss_pred             CCCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECC--------EEC---------
Q ss_conf             4466677344788999886-8778999999986986999999240687807999799999--------892---------
Q gi|254780406|r    6 IVQENFTPQRVSKVIARAG-IASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDG--------VPL---------   67 (354)
Q Consensus         6 ~~~~~~~~~RL~K~la~~g-~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg--------~~i---------   67 (354)
T Consensus        12 ~V~~~~~G~RLD~fL~~~l~~~srs~i~klir~g~V~VNg~~vk-~~~~l~~GD~I~i~~~~~~~~~~~p~~~~~~~~~~   90 (317)
T PRK11025         12 AISADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAA   90 (317)
T ss_pred             EECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98930079759999997566269999999998699899999957-10465799999988866564445778855110024


Q ss_pred             ----CCCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCC---CCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CC
Q ss_conf             ----25564389602787515631443333644210110234---3200266554332320222367641000123--44
Q gi|254780406|r   68 ----RKAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIF---SRVISVGRLDINTEGLLLLTNDGGLARVLEL--PS  138 (354)
Q Consensus        68 ----~~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~  138 (354)
T Consensus        91 l~~~IlyED~~llvvnKPaGl~vhp~~~~~~~-~~~~l~~~~~~~~~~~iVHRLDr~TSGllv~AK~~~a~~~l~~~f~~  169 (317)
T PRK11025         91 LADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE  169 (317)
T ss_pred             CCCEEEEECCCEEEEECCCCCEECCCCCCHHH-HHHHHHHHCCCCCCCCCEECCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             55607994798899977435622688873168-99999975888876781312699874268871689999999999973


Q ss_pred             CCCEEEEEEEECCCCCHHHH--H------HHHHH---HH-CCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHH
Q ss_conf             57404775211245564678--8------87400---00-0876750343036402688079999995184289999999
Q gi|254780406|r  139 TQWLRVYRVRFHGQVDQDKL--N------LLKKG---IV-IQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFE  206 (354)
Q Consensus       139 ~~~~k~Y~v~v~~~~~~~~~--~------~~~~g---~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~  206 (354)
T Consensus       170 r~v~K~Y~Alv~G~~~~~~~~i~~pl~~~~~~~~~~~~~~~~~gk~a~T~~~v~~~~~~~sLv~~~~~TGRtHQIRvHla  249 (317)
T PRK11025        170 KGMQKDYLALVRGQWQSHVKVVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRASPVTGRTHQIRVHTQ  249 (317)
T ss_pred             CCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf             72575599998276367788796100046676764566227777764101446765278640057558075899999998


Q ss_pred             HCCCEEEEEEEEEECCEE
Q ss_conf             839868688975870545
Q gi|254780406|r  207 FFNWKVNRLIRISYGPFQ  224 (354)
Q Consensus       207 ~~g~~V~~L~Rv~~G~~~  224 (354)
T Consensus       250 ~~G~PI~GD--~~YG~~~  265 (317)
T PRK11025        250 YAGHPIAFD--DRYGDRE  265 (317)
T ss_pred             HCCCCEECC--CCCCCCC
T ss_conf             779968385--2028742