HHsearch alignment for GI: 254780406 and conserved domain: PRK11025
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional.
Probab=99.96 E-value=1e-29 Score=207.01 Aligned_cols=215 Identities=16% Similarity=0.198 Sum_probs=158.9
Q ss_pred CCCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECC--------EEC---------
Q ss_conf 4466677344788999886-8778999999986986999999240687807999799999--------892---------
Q gi|254780406|r 6 IVQENFTPQRVSKVIARAG-IASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDG--------VPL--------- 67 (354)
Q Consensus 6 ~~~~~~~~~RL~K~la~~g-~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg--------~~i--------- 67 (354)
T Consensus 12 ~V~~~~~G~RLD~fL~~~l~~~srs~i~klir~g~V~VNg~~vk-~~~~l~~GD~I~i~~~~~~~~~~~p~~~~~~~~~~ 90 (317)
T PRK11025 12 AISADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAA 90 (317)
T ss_pred EECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98930079759999997566269999999998699899999957-10465799999988866564445778855110024
Q ss_pred ----CCCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCC---CCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CC
Q ss_conf ----25564389602787515631443333644210110234---3200266554332320222367641000123--44
Q gi|254780406|r 68 ----RKAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIF---SRVISVGRLDINTEGLLLLTNDGGLARVLEL--PS 138 (354)
Q Consensus 68 ----~~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~ 138 (354)
T Consensus 91 l~~~IlyED~~llvvnKPaGl~vhp~~~~~~~-~~~~l~~~~~~~~~~~iVHRLDr~TSGllv~AK~~~a~~~l~~~f~~ 169 (317)
T PRK11025 91 LADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 (317)
T ss_pred CCCEEEEECCCEEEEECCCCCEECCCCCCHHH-HHHHHHHHCCCCCCCCCEECCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 55607994798899977435622688873168-99999975888876781312699874268871689999999999973
Q ss_pred CCCEEEEEEEECCCCCHHHH--H------HHHHH---HH-CCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHH
Q ss_conf 57404775211245564678--8------87400---00-0876750343036402688079999995184289999999
Q gi|254780406|r 139 TQWLRVYRVRFHGQVDQDKL--N------LLKKG---IV-IQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFE 206 (354)
Q Consensus 139 ~~~~k~Y~v~v~~~~~~~~~--~------~~~~g---~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~ 206 (354)
T Consensus 170 r~v~K~Y~Alv~G~~~~~~~~i~~pl~~~~~~~~~~~~~~~~~gk~a~T~~~v~~~~~~~sLv~~~~~TGRtHQIRvHla 249 (317)
T PRK11025 170 KGMQKDYLALVRGQWQSHVKVVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRASPVTGRTHQIRVHTQ 249 (317)
T ss_pred CCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 72575599998276367788796100046676764566227777764101446765278640057558075899999998
Q ss_pred HCCCEEEEEEEEEECCEE
Q ss_conf 839868688975870545
Q gi|254780406|r 207 FFNWKVNRLIRISYGPFQ 224 (354)
Q Consensus 207 ~~g~~V~~L~Rv~~G~~~ 224 (354)
T Consensus 250 ~~G~PI~GD--~~YG~~~ 265 (317)
T PRK11025 250 YAGHPIAFD--DRYGDRE 265 (317)
T ss_pred HCCCCEECC--CCCCCCC
T ss_conf 779968385--2028742