HHsearch alignment for GI: 254780406 and conserved domain: PRK11112
>PRK11112 tRNA pseudouridine synthase C; Provisional.
Probab=99.76 E-value=2.7e-19 Score=141.31 Aligned_cols=155 Identities=16% Similarity=0.183 Sum_probs=103.8
Q ss_pred CCCCEEEEECCCCCEEEECCCCCCCCC--CCCEEECC-CCCCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCEE
Q ss_conf 556438960278751563144333364--42101102-343200266554332320222367641000123--4457404
Q gi|254780406|r 69 KAERTRLWLYHKPIGLVTTHSDPDGRS--TVFDNLPS-IFSRVISVGRLDINTEGLLLLTNDGGLARVLEL--PSTQWLR 143 (354)
Q Consensus 69 ~~~~~~~~~~~KP~g~~~~~~~~~~~~--~~~~~~~~-~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~~~~~k 143 (354)
T Consensus 5 lyED~~llVVnKPaGl~vh~~~~~~~~~~~~~~~l~~~~~~~~~~VHRLDr~TSGllv~AK~~~a~~~L~~~f~~~~v~K 84 (257)
T PRK11112 5 LYQDEWLVAVNKPAGWLVHRSWLDRHETVFVMQTVRDQIGQHVFTAHRLDRPTSGVLLMALSSEAARLLAQQFEQHQIQK 84 (257)
T ss_pred EEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCE
T ss_conf 99669899999999986479988878519999999875277653205778987517999689999999999987576863
Q ss_pred EEEEEECCCCCHHHHH---------HHHHHHHCCCEEEECC--CEEEEE-----------CCCCEEEEEEEEEECCHHHH
Q ss_conf 7752112455646788---------8740000087675034--303640-----------26880799999951842899
Q gi|254780406|r 144 VYRVRFHGQVDQDKLN---------LLKKGIVIQGICYGDM--QVTLDT-----------QKGSNAWVTVGLREGKNREI 201 (354)
Q Consensus 144 ~Y~v~v~~~~~~~~~~---------~~~~g~~~~~~~~~~~--~~~~~~-----------~~~~~~~~~v~l~eGr~~qI 201 (354)
T Consensus 85 ~Y~Alv~G~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~~~~~~~sLv~~~p~TGRtHQI 164 (257)
T PRK11112 85 TYHAIVRGWLMEEAVLDYPLKEELDKIADKFAREDKEPQPAVTHYRGLATVEMPVATGRYPTTRYSLVELEPKTGRKHQL 164 (257)
T ss_pred EEEEEEEEECCCCCEEEEECCCCCCCCCCEEECCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCHHHH
T ss_conf 99999964538997685243446665563130228986363454111026875101232467857999996486852999
Q ss_pred HHHHHHCCCEEEEEEEEEECCEEC
Q ss_conf 999998398686889758705451
Q gi|254780406|r 202 KKVFEFFNWKVNRLIRISYGPFQL 225 (354)
Q Consensus 202 rr~~~~~g~~V~~L~Rv~~G~~~l 225 (354)
T Consensus 165 RvHla~lGhPIvG--D~~YG~~~~ 186 (257)
T PRK11112 165 RRHMAHLRHPIIG--DSKHGDLRQ 186 (257)
T ss_pred HHHHHHCCCCEEC--CCCCCCCCC
T ss_conf 9999987996757--725587544