HHsearch alignment for GI: 254780406 and conserved domain: PRK11112

>PRK11112 tRNA pseudouridine synthase C; Provisional.
Probab=99.76  E-value=2.7e-19  Score=141.31  Aligned_cols=155  Identities=16%  Similarity=0.183  Sum_probs=103.8

Q ss_pred             CCCCEEEEECCCCCEEEECCCCCCCCC--CCCEEECC-CCCCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCEE
Q ss_conf             556438960278751563144333364--42101102-343200266554332320222367641000123--4457404
Q gi|254780406|r   69 KAERTRLWLYHKPIGLVTTHSDPDGRS--TVFDNLPS-IFSRVISVGRLDINTEGLLLLTNDGGLARVLEL--PSTQWLR  143 (354)
Q Consensus        69 ~~~~~~~~~~~KP~g~~~~~~~~~~~~--~~~~~~~~-~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~~~~~k  143 (354)
T Consensus         5 lyED~~llVVnKPaGl~vh~~~~~~~~~~~~~~~l~~~~~~~~~~VHRLDr~TSGllv~AK~~~a~~~L~~~f~~~~v~K   84 (257)
T PRK11112          5 LYQDEWLVAVNKPAGWLVHRSWLDRHETVFVMQTVRDQIGQHVFTAHRLDRPTSGVLLMALSSEAARLLAQQFEQHQIQK   84 (257)
T ss_pred             EEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCE
T ss_conf             99669899999999986479988878519999999875277653205778987517999689999999999987576863


Q ss_pred             EEEEEECCCCCHHHHH---------HHHHHHHCCCEEEECC--CEEEEE-----------CCCCEEEEEEEEEECCHHHH
Q ss_conf             7752112455646788---------8740000087675034--303640-----------26880799999951842899
Q gi|254780406|r  144 VYRVRFHGQVDQDKLN---------LLKKGIVIQGICYGDM--QVTLDT-----------QKGSNAWVTVGLREGKNREI  201 (354)
Q Consensus       144 ~Y~v~v~~~~~~~~~~---------~~~~g~~~~~~~~~~~--~~~~~~-----------~~~~~~~~~v~l~eGr~~qI  201 (354)
T Consensus        85 ~Y~Alv~G~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~~~~~~~sLv~~~p~TGRtHQI  164 (257)
T PRK11112         85 TYHAIVRGWLMEEAVLDYPLKEELDKIADKFAREDKEPQPAVTHYRGLATVEMPVATGRYPTTRYSLVELEPKTGRKHQL  164 (257)
T ss_pred             EEEEEEEEECCCCCEEEEECCCCCCCCCCEEECCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCHHHH
T ss_conf             99999964538997685243446665563130228986363454111026875101232467857999996486852999


Q ss_pred             HHHHHHCCCEEEEEEEEEECCEEC
Q ss_conf             999998398686889758705451
Q gi|254780406|r  202 KKVFEFFNWKVNRLIRISYGPFQL  225 (354)
Q Consensus       202 rr~~~~~g~~V~~L~Rv~~G~~~l  225 (354)
T Consensus       165 RvHla~lGhPIvG--D~~YG~~~~  186 (257)
T PRK11112        165 RRHMAHLRHPIIG--DSKHGDLRQ  186 (257)
T ss_pred             HHHHHHCCCCEEC--CCCCCCCCC
T ss_conf             9999987996757--725587544