HHsearch alignment for GI: 254780406 and conserved domain: TIGR00005
>TIGR00005 rluA_subfam pseudouridine synthase, RluA family; InterPro: IPR006225 This is the RluD subfamily of pseudouridine synthases. In Escherichia coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917. RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homologue from E. coli outside this family, TruC (Q46918 from SWISSPROT), modifies uracil-65 in transfer RNAs to pseudouridine. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis.
Probab=99.97 E-value=8.3e-32 Score=220.15 Aligned_cols=212 Identities=24% Similarity=0.317 Sum_probs=175.8
Q ss_pred CCCCCHHHHHHHHHCCC-CCHHHHHHHHHCCCEEEC-CEECCCCCEEECCCCEEE-EC-------------CEE----CC
Q ss_conf 66773447889998868-778999999986986999-999240687807999799-99-------------989----22
Q gi|254780406|r 9 ENFTPQRVSKVIARAGI-ASRREVERMIAQQRVKVN-GILLERAAVNVMSTDHIE-VD-------------GVP----LR 68 (354)
Q Consensus 9 ~~~~~~RL~K~la~~g~-~SRr~a~~lI~~G~V~Vn-g~~v~~~~~~v~~~d~v~-vd-------------g~~----i~ 68 (354)
T Consensus 1 ~~~~g~Rld~~L~~~l~~~sr~~~~~~i~~G~V~vN~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~p~~l~l~ 80 (337)
T TIGR00005 1 EEQAGQRLDDFLASLLPDLSRSRIQKLIENGQVKVNKGKVTANPKLKIKDGDRITPVRVPEEQEELEVPVQDIPADLKLD 80 (337)
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEECCCCCCCCCCEEECCCCEEECEECCCCCCCCCCCCCCCCCCCCCE
T ss_conf 97430269999999836788889999987496896376425674305238746601001464332357665673422113
Q ss_pred -CCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCC----------CEECCCCCCCCCCCEEEECCCCCCCCCCCC-
Q ss_conf -55643896027875156314433336442101102343----------200266554332320222367641000123-
Q gi|254780406|r 69 -KAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFS----------RVISVGRLDINTEGLLLLTNDGGLARVLEL- 136 (354)
Q Consensus 69 -~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~vgRLD~~t~GLlllTndg~l~~~l~~- 136 (354)
T Consensus 81 IlfEDe~i~vinKP~G~~vHP~~~~~~~Tv~~~L~~~~~~~~~gig~~~~~~~vHRLD~dTSGl~~vAK~~~A~~~L~~q 160 (337)
T TIGR00005 81 ILFEDEDILVINKPSGLVVHPGGGNSFGTVLNALLAHCPERLSGIGGVFRVGIVHRLDRDTSGLMVVAKTRLALRELQRQ 160 (337)
T ss_pred EEEECCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECHHHHHHHHHH
T ss_conf 78750838999789875644888887354899999864766434576123613552477872589997086899999999
Q ss_pred -CCCCCEEEEEEEECCCCC-HHHH-----------HHHHHHHHCCC---EEEECCCEEEEEC--CCCEEEEEEEEEECCH
Q ss_conf -445740477521124556-4678-----------88740000087---6750343036402--6880799999951842
Q gi|254780406|r 137 -PSTQWLRVYRVRFHGQVD-QDKL-----------NLLKKGIVIQG---ICYGDMQVTLDTQ--KGSNAWVTVGLREGKN 198 (354)
Q Consensus 137 -p~~~~~k~Y~v~v~~~~~-~~~~-----------~~~~~g~~~~~---~~~~~~~~~~~~~--~~~~~~~~v~l~eGr~ 198 (354)
T Consensus 161 l~~~~~~k~Y~A~V~G~~~~~~~~~~~~P~~r~~~~~~~~~v~~~~~~~GK~A~T~f~~~~~~A~~~~sl~~~~L~TGRT 240 (337)
T TIGR00005 161 LKERTVTKEYVALVHGEFDLSKKGTVDAPLGRVPNNRGKMAVAPSSEKEGKPAVTHFKVLERIADGNASLVECELETGRT 240 (337)
T ss_pred HHHCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEHHHCCCCCCEEEEEECCCCC
T ss_conf 98386117899998317688764478065323688602689976788889612342121001104452189998534897
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECC
Q ss_conf 899999998398686889758705
Q gi|254780406|r 199 REIKKVFEFFNWKVNRLIRISYGP 222 (354)
Q Consensus 199 ~qIrr~~~~~g~~V~~L~Rv~~G~ 222 (354)
T Consensus 241 HQIRVHl~~~ghPl~gD~--~YG~ 262 (337)
T TIGR00005 241 HQIRVHLQYLGHPLAGDP--LYGN 262 (337)
T ss_pred HHHHHHHHHHCCCEECCC--CCCC
T ss_conf 389999997168531432--5688