>TIGR00093 TIGR00093 conserved hypothetical protein; InterPro: IPR000748 Pseudouridine synthases are responsible for the synthesis of pseudouridine from uracil in ribosomal RNA. Several bacterial proteins from the Rsu family of pseudouridine synthases have been shown to share regions of similarities, including Escherichia coli and Haemophilus influenzae 16S pseudouridylate 516 synthase (gene rsuA); E. coli hypothetical proteins yciL and ymfC and the corresponding H. influenzae proteins HI1199 and HI0694 respectively; Aquifex aeolicus hypothetical proteins AQ_554 and AQ_1464; Bacillus subtilis hypothetical proteins ypuL and ytzF; Borrelia burgdorferi hypothetical protein BB0129; Helicobacter pylori hypothetical protein HP1459; and Synechocystis sp. (strain PCC 6803) hypothetical proteins slr0361 and slr0612. These are proteins of from 25 to 40 kD which contain a number of conserved regions in their central section.; GO: 0003723 RNA binding, 0004730 pseudouridylate synthase activity, 0001522 pseudouridine synthesis.

Probab=100.00 E-value=0 Score=342.99 Aligned_cols=160 Identities=36% Similarity=0.605 Sum_probs=153.2 Q ss_pred CCCCEEEECCCCCCCCCCCCEEECCCC---CCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCH Q ss_conf 787515631443333644210110234---32002665543323202223676410001234457404775211245564 Q gi|254780406|r 79 HKPIGLVTTHSDPDGRSTVFDNLPSIF---SRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQ 155 (354) Q Consensus 79 ~KP~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~~ 155 (354) T Consensus 1 nKP~g~l~~~~Dp~~r~~~~~~l~~~~~~~~~~~a~GRLD~ds~GLlLLT~~G~L~~RL~~p~~~~eK~Y~V~v~g~v~~ 80 (185) T TIGR00093 1 NKPQGVLCTTDDPEGRKTVKDLLPKKLIRGKRLHAVGRLDRDSEGLLLLTNDGELQHRLTHPKFHHEKTYLVTVEGPVTD 80 (185) T ss_pred CCCCCEEECCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCH T ss_conf 99850443584988772350045202310574677402674562038990697999987176435896699995598588 Q ss_pred HHHHHHHHHHHCCCEEEE--CCCEEEEECCC---------------CEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEE Q ss_conf 678887400000876750--34303640268---------------8079999995184289999999839868688975 Q gi|254780406|r 156 DKLNLLKKGIVIQGICYG--DMQVTLDTQKG---------------SNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRI 218 (354) Q Consensus 156 ~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~---------------~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv 218 (354) T Consensus 81 ~~~~~~~~Gv~L~~~~~~tk~a~~~~~~~~~~~~pr~ppir~r~~i~~S~l~~tl~EGRNRqvRRm~a~~G~~V~~L~R~ 160 (185) T TIGR00093 81 EDLEALRKGVQLEDGKTLTKPAKLKVISEPEDLWPRNPPIRERKSIPTSWLRVTLTEGRNRQVRRMFAAVGFPVLRLHRV 160 (185) T ss_pred HHHHHHHCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCCCEEEEEEEECCCHHHHHHHHHHCCEEEEEEEE T ss_conf 89989871760058735644237787067131356787312003688225899996087068878889838903478988 Q ss_pred EECCEEC-CC----CCCCCEEECCH Q ss_conf 8705451-87----55474886799 Q gi|254780406|r 219 SYGPFQL-GT----LLAGSTREVSK 238 (354) Q Consensus 219 ~~G~~~l-~~----L~~G~~r~l~~ 238 (354) T Consensus 161 ~iG~~~L~~~rGkvL~~G~wR~L~~ 185 (185) T TIGR00093 161 RIGDVSLDEGRGKVLPNGEWRELTD 185 (185) T ss_pred EECCEEECCCCCEECCCCCEEECCC T ss_conf 6224342455743538983021889

HHsearch alignment for GI: 254780406 and conserved domain: TIGR00093