HHsearch alignment for GI: 254780406 and conserved domain: TIGR00425
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative; InterPro: IPR004802 This family contains the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether the archaeal proteins in this family modify tRNA, rRNA, or both. .
Probab=96.20 E-value=0.036 Score=33.52 Aligned_cols=166 Identities=20% Similarity=0.194 Sum_probs=107.2
Q ss_pred CCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 56438960278751563144333364421011023432002665543323202223676410001234457404775211
Q gi|254780406|r 70 AERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRF 149 (354)
Q Consensus 70 ~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v 149 (354)
T Consensus 31 yI~~Gvv~lDKP~gPsSHeV~~-Wvr---~iL--~veKtGH~GTLDPKVTGvLpv~ierATr~v~~~~~a~KEYVClmRL 104 (326)
T TIGR00425 31 YIRKGVVNLDKPSGPSSHEVVA-WVR---RIL--RVEKTGHGGTLDPKVTGVLPVCIERATRLVKSLQEAPKEYVCLMRL 104 (326)
T ss_pred HHHCCEEEEECCCCCCCCEEHH-HHH---HHH--CCCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 6206507876484188640102-212---101--0112465875788312462121000235644531699745997761
Q ss_pred CCCCCHH-HHHHHHHHHHCCCEEEE--CCC--------------EEEEECCCCE--EEEEEEEEECCHHHHHHHHHHCCC
Q ss_conf 2455646-78887400000876750--343--------------0364026880--799999951842899999998398
Q gi|254780406|r 150 HGQVDQD-KLNLLKKGIVIQGICYG--DMQ--------------VTLDTQKGSN--AWVTVGLREGKNREIKKVFEFFNW 210 (354)
Q Consensus 150 ~~~~~~~-~~~~~~~g~~~~~~~~~--~~~--------------~~~~~~~~~~--~~~~v~l~eGr~~qIrr~~~~~g~ 210 (354)
T Consensus 105 H~~~~~e~~~~rvl~~f--~G~ifQrPPLksAVKr~LRvR~IYe~~llE~Dg~d~LvlFrv~CeaGTY--iRkLC~d~G~ 180 (326)
T TIGR00425 105 HRDAKEEKDIERVLKEF--TGRIFQRPPLKSAVKRQLRVRTIYESELLEVDGKDRLVLFRVSCEAGTY--IRKLCVDIGE 180 (326)
T ss_pred CHHHHHHHHHHHHHHHC--CCEEECCCCCHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC--HHHHHHHHHH
T ss_conf 20121257899998851--8303338862565223365016899887720799626899998757861--5687888867
Q ss_pred ------EEEEEEEEEECCEE-------CCCCCCCCEEECCH---HHHHHHH
Q ss_conf ------68688975870545-------18755474886799---9998753
Q gi|254780406|r 211 ------KVNRLIRISYGPFQ-------LGTLLAGSTREVSK---KILREQL 245 (354)
Q Consensus 211 ------~V~~L~Rv~~G~~~-------l~~L~~G~~r~l~~---~e~~~l~ 245 (354)
T Consensus 181 ~LG~GahMqELRRtrsG~f~E~d~~vtLhDllDAy~fw~e~gDE~yLR~~I 231 (326)
T TIGR00425 181 LLGTGAHMQELRRTRSGAFGERDDMVTLHDLLDAYVFWKEDGDESYLREVI 231 (326)
T ss_pred HHCCCCCCCHHEEEEEECCCCCCCCEEHHHHHEEEEEEECCCCHHHHHHHH
T ss_conf 617672120010100102202467060420311102220378725656542