HHsearch alignment for GI: 254780406 and conserved domain: TIGR03069
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=98.46 E-value=3.2e-07 Score=65.31 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECC
Q ss_conf 73447889998868778999999986986999999240687807999799999
Q gi|254780406|r 12 TPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDG 64 (354)
Q Consensus 12 ~~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg 64 (354)
T Consensus 182 sSlRLDavvs~~~~~SRska~~lI~~g~V~vN~~~v~~~s~~v~~gDiiSvRG 234 (257)
T TIGR03069 182 ASLRIDAIASAGFGLSRSKIVDQIKAGRLRLNWKTVTQPSRELKVGDRLQLRG 234 (257)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEEEC
T ss_conf 12138999998866579999999884968989999057875668999999906