HHsearch alignment for GI: 254780406 and conserved domain: TIGR03069

>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=98.46  E-value=3.2e-07  Score=65.31  Aligned_cols=53  Identities=15%  Similarity=0.234  Sum_probs=51.2

Q ss_pred             CCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECC
Q ss_conf             73447889998868778999999986986999999240687807999799999
Q gi|254780406|r   12 TPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDG   64 (354)
Q Consensus        12 ~~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg   64 (354)
T Consensus       182 sSlRLDavvs~~~~~SRska~~lI~~g~V~vN~~~v~~~s~~v~~gDiiSvRG  234 (257)
T TIGR03069       182 ASLRIDAIASAGFGLSRSKIVDQIKAGRLRLNWKTVTQPSRELKVGDRLQLRG  234 (257)
T ss_pred             CCCCHHHHHHHHHCCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEEEC
T ss_conf             12138999998866579999999884968989999057875668999999906