HHsearch alignment for GI: 254780406 and conserved domain: cd00165

>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=99.07  E-value=2.8e-10  Score=84.56  Aligned_cols=66  Identities=32%  Similarity=0.478  Sum_probs=55.6

Q ss_pred             HHHHHHHHHC-CCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCC---CCCEEEEECC
Q ss_conf             4478899988-6877899999998698699999924068780799979999989225---5643896027
Q gi|254780406|r   14 QRVSKVIARA-GIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRK---AERTRLWLYH   79 (354)
Q Consensus        14 ~RL~K~la~~-g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~---~~~~~~~~~~   79 (354)
T Consensus         1 ~RLd~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~gd~i~i~~~~~~~~i~~~~~~~~~i~   70 (70)
T cd00165           1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYEDKKLLVVN   70 (70)
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEECCCCCCCCEEEECCCEEEEC
T ss_conf             9488999874871589999999981938989999588888989999999878778867323269899969