HHsearch alignment for GI: 254780406 and conserved domain: cd02553
>cd02553 PseudoU_synth_RsuA PseudoU_synth_RsuA: Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.
Probab=100.00 E-value=0 Score=339.32 Aligned_cols=163 Identities=32% Similarity=0.497 Sum_probs=150.7
Q ss_pred EEEECCCCCEEEECCCCCCCCCCCCEEECCCC--CCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf 89602787515631443333644210110234--3200266554332320222367641000123445740477521124
Q gi|254780406|r 74 RLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIF--SRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG 151 (354)
Q Consensus 74 ~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~ 151 (354)
T Consensus 1 VYillnKP~G~v~t~~d~~~-ktv~dll~~~~~~~~l~~vGRLD~~s~GLLLlTNDG~l~~~l~hP~~~i~K~Y~V~v~~ 79 (167)
T cd02553 1 VYLMLNKPAGVVCATKDPHH-PTVIDLLPEPDRRRDLFPVGRLDKDTTGLLLLTNDGQLAHRLTSPKKHVPKTYEVTLAG 79 (167)
T ss_pred CEEEEECCCCEEECCCCCCC-CCHHHHCCCCCCCCCEEECCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 99999889997969889999-97744335500367556744568997622999188889976414447888899998767
Q ss_pred CCCHHHHHHHHHHHHCCCE-EEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECC-CCC
Q ss_conf 5564678887400000876-75034303640268807999999518428999999983986868897587054518-755
Q gi|254780406|r 152 QVDQDKLNLLKKGIVIQGI-CYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLG-TLL 229 (354)
Q Consensus 152 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~-~L~ 229 (354)
T Consensus 80 ~i~~~~l~~l~~Gv~i~dg~~~~~~~v~~~~----~~~~~i~l~eGknrqIRrm~~~~g~~V~~L~Rv~iG~l~L~~~L~ 155 (167)
T cd02553 80 PLTEDDIEAFAEGVLLHDGYPTKPAKLEILS----PTTVRLTITEGKYHQVKRMFAAVGNKVVALHRIRIGGLELDDDLA 155 (167)
T ss_pred CCCHHHHHHHHCCCEECCCCEEEEEEEEEEC----CCEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEEECCEECCCCCC
T ss_conf 8999999999769896498597517999925----868999998884629999999869888589999981771599999
Q ss_pred CCCEEECCHHHH
Q ss_conf 474886799999
Q gi|254780406|r 230 AGSTREVSKKIL 241 (354)
Q Consensus 230 ~G~~r~l~~~e~ 241 (354)
T Consensus 156 ~G~~R~Lt~~Ei 167 (167)
T cd02553 156 PGEWRPLTEEEL 167 (167)
T ss_pred CCCEEECCHHHC
T ss_conf 976138987879