HHsearch alignment for GI: 254780406 and conserved domain: cd02555
>cd02555 PSSA_1 PSSA_1: Pseudouridine synthase, a subgroup of the RsuA family. This group is comprised of bacterial proteins assigned to the RsuA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The TruA family is comprised of proteins related to Escherichia coli RsuA.
Probab=100.00 E-value=0 Score=337.29 Aligned_cols=165 Identities=25% Similarity=0.353 Sum_probs=150.8
Q ss_pred CEEEEECCCCCEEEECCCCCCCCCC--------CCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEE
Q ss_conf 4389602787515631443333644--------21011023432002665543323202223676410001234457404
Q gi|254780406|r 72 RTRLWLYHKPIGLVTTHSDPDGRST--------VFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLR 143 (354)
Q Consensus 72 ~~~~~~~~KP~g~~~~~~~~~~~~~--------~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k 143 (354)
T Consensus 3 epvyllLnKP~G~v~t~~d~~~~~~~~~~~~~~~~~~l~~~~~rl~pVGRLD~~s~GLLllTNDG~l~~~l~~P~~~i~k 82 (177)
T cd02555 3 EPVTLLLHKPAGMVSEQALALLGPGQRSAADRSGRRPLKGHFARLAPIGPLDKDASGLLVFSQDGRVLRKLIGDASRLEQ 82 (177)
T ss_pred CCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCHHHHHHHCCCCCCCCE
T ss_conf 44999998998487077576678750133345410001022366216047899981189991888999875498668978
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCE
Q ss_conf 77521124556467888740000087675034303640268807999999518428999999983986868897587054
Q gi|254780406|r 144 VYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPF 223 (354)
Q Consensus 144 ~Y~v~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~ 223 (354)
T Consensus 83 ~Y~V~v~~~~~~~~l~~l~~Gv~l~g~~~~~~~v~~~~----~~~~~i~l~eGknrqIRrm~~~~g~~V~~L~Ri~iG~l 158 (177)
T cd02555 83 EYLVEVRGELTAGGLERLNHGLTYDGRELPPAKVSWQN----EQRLRFALKEPQPGQIRRMCESVGLEVVALRRIRIGRV 158 (177)
T ss_pred EEEEEECCCCCHHHHHHHHCCEEECCEEECCEEEEEEC----CCEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEEECCE
T ss_conf 99999898799999987528767899896786999957----99599999918416999999987997989999999888
Q ss_pred ECCCCCCCCEEECCHHH
Q ss_conf 51875547488679999
Q gi|254780406|r 224 QLGTLLAGSTREVSKKI 240 (354)
Q Consensus 224 ~l~~L~~G~~r~l~~~e 240 (354)
T Consensus 159 ~L~~L~~G~wR~Lt~~E 175 (177)
T cd02555 159 SLGKLPLGQWRYLTTGE 175 (177)
T ss_pred ECCCCCCCCCEECCCCC
T ss_conf 83889998831992426