HHsearch alignment for GI: 254780406 and conserved domain: cd02558
>cd02558 PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.
Probab=99.90 E-value=6.6e-24 Score=170.39 Aligned_cols=183 Identities=15% Similarity=0.120 Sum_probs=133.6
Q ss_pred CEEECCEECCCCCEEECCCCEEEE-----CCEECC-----CCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCC--C
Q ss_conf 869999992406878079997999-----998922-----5564389602787515631443333644210110234--3
Q gi|254780406|r 39 RVKVNGILLERAAVNVMSTDHIEV-----DGVPLR-----KAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIF--S 106 (354)
Q Consensus 39 ~V~Vng~~v~~~~~~v~~~d~v~v-----dg~~i~-----~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~--~ 106 (354)
T Consensus 3 ~v~~~G~~v~-~~~~l~~Gd~v~~~~~~~~e~p~p~~l~IlyEDd~llVVnKPaGl~vhP~~~~~~~tl~~~l~~~~~~~ 81 (246)
T cd02558 3 VVDADGEPLD-PDSPYRPGTFVWYYRELPDEPPIPFEETILHQDEHLLVADKPHFLPVTPRGRYVTETLLVRLRRQTGNP 81 (246)
T ss_pred EECCCCEECC-CCCEECCCCEEEEEECCCCCCCCCCCCCEEEECCCEEEEECCCCCCEEECCCCCCCHHHHHHHHHCCCC
T ss_conf 8880997979-998727999999980589999999989989978999999999998576189972017999998840998
Q ss_pred CEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCEEEEEEEECCCCCHHHHHHHHH----H------HHCCCEEEEC
Q ss_conf 200266554332320222367641000123--445740477521124556467888740----0------0008767503
Q gi|254780406|r 107 RVISVGRLDINTEGLLLLTNDGGLARVLEL--PSTQWLRVYRVRFHGQVDQDKLNLLKK----G------IVIQGICYGD 174 (354)
Q Consensus 107 ~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~~~~~k~Y~v~v~~~~~~~~~~~~~~----g------~~~~~~~~~~ 174 (354)
T Consensus 82 ~~~~VHRLDr~TSGllv~AK~~~a~~~l~~~f~~r~v~K~Y~Alv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~A~ 161 (246)
T cd02558 82 DLTPAHRLDRLTAGLVLFSKRPETRGAYQTLFARREVSKTYEAVAPYVPALTFPLTVRSRIVKGRGFFQAREVEGEPNAE 161 (246)
T ss_pred CCCEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCEEEECCCCCCCEE
T ss_conf 65473467998746999988999999999986468452799999983377678636636557887644898058998769
Q ss_pred CCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEE
Q ss_conf 43036402688079999995184289999999839868688975870545
Q gi|254780406|r 175 MQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQ 224 (354)
Q Consensus 175 ~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~ 224 (354)
T Consensus 162 T~~~~l~~~~~~slv~~~~~TGRtHQIRvHla~iGhPIvGD~--~Yg~~~ 209 (246)
T cd02558 162 TRIELLARRGGWGLYRLSPHTGKTHQLRVHMAALGVPILNDP--FYPVLL 209 (246)
T ss_pred EEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCC--CCCCCC
T ss_conf 999999983985899999687862999999998799350783--777644