HHsearch alignment for GI: 254780406 and conserved domain: cd02566
>cd02566 PseudoU_synth_RluE PseudoU_synth_RluE: Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.
Probab=100.00 E-value=0 Score=310.68 Aligned_cols=152 Identities=31% Similarity=0.522 Sum_probs=141.0
Q ss_pred EEECCCCCEEEECCCCC-CCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 96027875156314433-33644210110234320026655433232022236764100012344574047752112455
Q gi|254780406|r 75 LWLYHKPIGLVTTHSDP-DGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQV 153 (354)
Q Consensus 75 ~~~~~KP~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~ 153 (354)
T Consensus 1 ~i~lnKP~G~v~t~~d~~~~~~~v~d~~~~--~~l~~VGRLD~ds~GLLLlTnDG~l~~~L~hP~~~i~K~Y~v~v~g~~ 78 (168)
T cd02566 1 LILFNKPYGVLSQFTDESEKHKTLKDYIDD--PGVYAAGRLDRDSEGLLLLTDDGRLQHRITDPSFKHPKTYYVQVEGVP 78 (168)
T ss_pred CEEEECCCCEEECCCCCCCCCCEEHHHCCC--CCEEECCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf 989989999797966888999782440788--881784266789887599829699999873776799779999986679
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCEEEEE---------------CCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 6467888740000087675034303640---------------2688079999995184289999999839868688975
Q gi|254780406|r 154 DQDKLNLLKKGIVIQGICYGDMQVTLDT---------------QKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRI 218 (354)
Q Consensus 154 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv 218 (354)
T Consensus 79 ~~~~l~~l~~Gv~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~i~l~eGknrqIRrm~~~~g~~V~~L~Rv 158 (168)
T cd02566 79 TEDALEQLRNGVELGDGLTLPAKVEKVDEPPWLWEREPPIRFRKNIPTSWIEITICEGKNRQVRRMTAAVGFPTLRLIRV 158 (168)
T ss_pred CHHHHHHHHCCCEECCEEEEEEEEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEE
T ss_conf 99999998779697987864459999426544321256613201478348999996172199999999859969589999
Q ss_pred EECCEECCCC
Q ss_conf 8705451875
Q gi|254780406|r 219 SYGPFQLGTL 228 (354)
Q Consensus 219 ~~G~~~l~~L 228 (354)
T Consensus 159 ~~G~i~L~~L 168 (168)
T cd02566 159 SIGDIGLDNL 168 (168)
T ss_pred EECCEECCCC
T ss_conf 9887884979