HHsearch alignment for GI: 254780406 and conserved domain: cd02573
>cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.
Probab=97.85 E-value=5.3e-05 Score=51.34 Aligned_cols=143 Identities=21% Similarity=0.222 Sum_probs=84.6
Q ss_pred EEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC---
Q ss_conf 96027875156314433336442101102343200266554332320222367641000123445740477521124---
Q gi|254780406|r 75 LWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG--- 151 (354)
Q Consensus 75 ~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~--- 151 (354)
T Consensus 2 ~l~i~Kp~g~tS~~~v~~~k~~----~--~~kKvGH~GTLDP~AtGvL~i~~g--~aTKl~~~~~~~~K~Y~~~~~lG~~ 73 (277)
T cd02573 2 ILLLDKPAGLTSHDVVQKVRRL----L--GTKKVGHTGTLDPLATGVLPIALG--EATKLSQYLLDADKTYRATVRLGEA 73 (277)
T ss_pred EEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEEC--HHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 8999679999989999999998----5--888556375779766033789988--8870527867899179999998760
Q ss_pred -----------------CCCHHHHHHHHHHHH--------------CCCE--------------EEECCC---EEEEECC
Q ss_conf -----------------556467888740000--------------0876--------------750343---0364026
Q gi|254780406|r 152 -----------------QVDQDKLNLLKKGIV--------------IQGI--------------CYGDMQ---VTLDTQK 183 (354)
Q Consensus 152 -----------------~~~~~~~~~~~~g~~--------------~~~~--------------~~~~~~---~~~~~~~ 183 (354)
T Consensus 74 TdT~D~~G~i~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySA~Kv~GkrlY~lAR~G~~v~~~~r~v~I~~i~ll~~~ 153 (277)
T cd02573 74 TDTDDAEGEIIETSPPPRLTEEEIEAALKAFTGEIEQVPPMYSAVKVNGKRLYELARAGEEVERPPRKVTIYSLELLSFD 153 (277)
T ss_pred CCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEC
T ss_conf 47655679871137899999999999999787707871988897464585199998779845568778999999998851
Q ss_pred C--CEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf 8--8079999995184289999999839------868688975870545187
Q gi|254780406|r 184 G--SNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 184 ~--~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 154 ~~~~~~~~~v~cSkG--TYIRsLa~Dig~~Lg~~a~l~~L~Rt~~G~f~~~~ 203 (277)
T cd02573 154 PENPEADFEVECSKG--TYIRSLARDLGKALGCGAHLSALRRTRSGPFTLED 203 (277)
T ss_pred CCCCEEEEEEEECCC--EEHHHHHHHHHHHHCCCEEEEEEECCEECCCCHHH
T ss_conf 789859999997786--33999999999985991898463820578869799