HHsearch alignment for GI: 254780406 and conserved domain: cd02867
>cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4. This group consists of Eukaryotic TruB proteins similar to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4, makes psi55 in the T loop of both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=96.83 E-value=0.0045 Score=39.17 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=82.4
Q ss_pred EEECCCCCEEEECCCCCCCCCC-----CCEEEC------------------CCCCCEECCCCCCCCCCCEEEECCCCCCC
Q ss_conf 9602787515631443333644-----210110------------------23432002665543323202223676410
Q gi|254780406|r 75 LWLYHKPIGLVTTHSDPDGRST-----VFDNLP------------------SIFSRVISVGRLDINTEGLLLLTNDGGLA 131 (354)
Q Consensus 75 ~~~~~KP~g~~~~~~~~~~~~~-----~~~~~~------------------~~~~~~~~vgRLD~~t~GLlllTndg~l~ 131 (354)
T Consensus 2 i~~vdKP~GiTS~~vv~~lk~~f~~s~~f~~~~~~~~~~~~~~~~r~k~~~~~~~KvGH~GTLDP~AtGvL~i~~G~--a 79 (312)
T cd02867 2 VFAINKPSGITSAQVLNDLKPLFLNSALFKDKIQRAVAKRGKKARRRKGRKRSKLKIGHGGTLDPLATGVLVVGVGA--G 79 (312)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCEEEECCCCCCCCCCEEEEEECH--H
T ss_conf 68874799999899999999983411102310222222101100000012457744402656787460338899875--4
Q ss_pred CCCCCCCCCCEEEEEEEECC--------------------CCCHHHHHHHHHHHHC--------------CCEE------
Q ss_conf 00123445740477521124--------------------5564678887400000--------------8767------
Q gi|254780406|r 132 RVLELPSTQWLRVYRVRFHG--------------------QVDQDKLNLLKKGIVI--------------QGIC------ 171 (354)
Q Consensus 132 ~~l~~p~~~~~k~Y~v~v~~--------------------~~~~~~~~~~~~g~~~--------------~~~~------ 171 (354)
T Consensus 80 TK~~~~~~~~~K~Y~a~~~lG~~TdT~D~eG~v~~~~~~~~~t~~~i~~~l~~F~G~i~Q~PP~ySA~Kv~GkrlYelAR 159 (312)
T cd02867 80 TKQLQDYLSCSKTYEATGLFGASTTTYDREGKILKKKPYSHITREDIEEVLAKFRGDIKQVPPLYSALKMDGKRLYEYAR 159 (312)
T ss_pred HEECHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHEEEECCEEHHHHHH
T ss_conf 40458666799179999998840578777787775057886889999999997788657648756834379988998986
Q ss_pred ----------EECCCEE---EEECCCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf ----------5034303---6402688079999995184289999999839------868688975870545187
Q gi|254780406|r 172 ----------YGDMQVT---LDTQKGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 172 ----------~~~~~~~---~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 160 ~G~~ver~i~~R~V~I~~l~l~~~~~~~~~~~~~v~cskGTYiRsla~dlg~~Lg~~ah~~~LrRt~~G~~~e~~ 234 (312)
T cd02867 160 EGKPLPRPIERRQVVVSELLVKDWIEPGPLFTRTVEEEGKQYERSVVKMLGKELKTFAEVTELTATAEGDPVEEV 234 (312)
T ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEHEEECCCCCCCCCCC
T ss_conf 897135777741699999998741588875999998179753889999986875886460104535458997222