HHsearch alignment for GI: 254780406 and conserved domain: cd02868
>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=98.07 E-value=1.5e-05 Score=54.81 Aligned_cols=156 Identities=22% Similarity=0.236 Sum_probs=84.8
Q ss_pred EEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCC-C-CCCCCCCCCCCCCEEEEEEEECC-
Q ss_conf 96027875156314433336442101102343200266554332320222367-6-41000123445740477521124-
Q gi|254780406|r 75 LWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTND-G-GLARVLELPSTQWLRVYRVRFHG- 151 (354)
Q Consensus 75 ~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTnd-g-~l~~~l~~p~~~~~k~Y~v~v~~- 151 (354)
T Consensus 2 il~v~KP~G~TS~~vv~~v~~~l~k~~~~-~kk~g~~GTLDP~AtGvLvi~vG~aTKl~~~l~--~~~~~K~Y~~~~~lG 78 (226)
T cd02868 2 LFAVYKPPGVHWKHVRDTIESNLLKYFPE-DKVLVGVHRLDAFSSGVLVLGVNHGNKLLSHLY--SNHPTRVYTIRGLLG 78 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCC-CEEEECCCCCCCCCCCCEEEEECHHHHHHHHHH--CCCCCEEEEEEEEEC
T ss_conf 89997599998999999999999766417-746960888897560338999887772569986--689976999999975
Q ss_pred -------------------CCCHHHHHHHHHHHHCCCEEEE--------------------------CCC-----EEEEE
Q ss_conf -------------------5564678887400000876750--------------------------343-----03640
Q gi|254780406|r 152 -------------------QVDQDKLNLLKKGIVIQGICYG--------------------------DMQ-----VTLDT 181 (354)
Q Consensus 152 -------------------~~~~~~~~~~~~g~~~~~~~~~--------------------------~~~-----~~~~~ 181 (354)
T Consensus 79 ~~TdT~D~~G~v~~~~~~~~i~~~~i~~~l~~~~g~~~q~pP~~SA~k~~GkraYelAR~G~~~~~~~r~v~I~~i~l~~ 158 (226)
T cd02868 79 KATENFFHTGRVIEKTTYDHITREKIERLLAVIQSGHQQKAFELCSVDDQSQQAAELAARGLIRPADKSPPIIYGIRLLE 158 (226)
T ss_pred CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHEEEECCHHHHHHHHCCCCCCCCCCCEEEEEEEEEE
T ss_conf 65479899708797358987999999999997158705857622357708812899986899766788734999999985
Q ss_pred CCCCEEEEEEEEEECCHHHHHHHHHHCCC------EEEEEEEEEECCEECCC-CCCCCE
Q ss_conf 26880799999951842899999998398------68688975870545187-554748
Q gi|254780406|r 182 QKGSNAWVTVGLREGKNREIKKVFEFFNW------KVNRLIRISYGPFQLGT-LLAGST 233 (354)
Q Consensus 182 ~~~~~~~~~v~l~eGr~~qIrr~~~~~g~------~V~~L~Rv~~G~~~l~~-L~~G~~ 233 (354)
T Consensus 159 ~~~p~~~~~v~cs~gtGtYIRsLa~DlG~~Lg~~a~l~~LrRt~~G~f~i~~al~~~~~ 217 (226)
T cd02868 159 FRPPEFTLEVQCINETQEYLRKLIHEIGLELRSSAVCTQVRRTRDGPFTVDDALLRKQW 217 (226)
T ss_pred ECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHCCCHHHC
T ss_conf 06998999999992867618999999998739927997789788967969995397778