HHsearch alignment for GI: 254780406 and conserved domain: smart00363
>smart00363 S4 S4 RNA-binding domain.
Probab=99.01 E-value=6.5e-10 Score=82.27 Aligned_cols=55 Identities=38% Similarity=0.579 Sum_probs=50.2
Q ss_pred HHHHHHHHHCCC-CCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECC
Q ss_conf 447889998868-7789999999869869999992406878079997999998922
Q gi|254780406|r 14 QRVSKVIARAGI-ASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLR 68 (354)
Q Consensus 14 ~RL~K~la~~g~-~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~ 68 (354)
T Consensus 1 ~RLD~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~~d~I~~~~~~~~ 56 (60)
T smart00363 1 RRLDKFLARLGLAPSRSQARKLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56 (60)
T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECCCCCC
T ss_conf 97889999838704799999999849179899994789889899999999885003