HHsearch alignment for GI: 254780406 and conserved domain: smart00363

>smart00363 S4 S4 RNA-binding domain.
Probab=99.01  E-value=6.5e-10  Score=82.27  Aligned_cols=55  Identities=38%  Similarity=0.579  Sum_probs=50.2

Q ss_pred             HHHHHHHHHCCC-CCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECC
Q ss_conf             447889998868-7789999999869869999992406878079997999998922
Q gi|254780406|r   14 QRVSKVIARAGI-ASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLR   68 (354)
Q Consensus        14 ~RL~K~la~~g~-~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~   68 (354)
T Consensus         1 ~RLD~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~~d~I~~~~~~~~   56 (60)
T smart00363        1 RRLDKFLARLGLAPSRSQARKLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK   56 (60)
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECCCCCC
T ss_conf             97889999838704799999999849179899994789889899999999885003