HHsearch alignment of GI: 254780406 and MMDB domain: 1p9k_A_

>1p9k_A (A:) ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12}

Probab=99.22  E-value=1.5e-12  Score=98.47  Aligned_cols=65  Identities=15%  Similarity=0.271  Sum_probs=59.9

Q ss_pred             CCCCCCCCCHHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCC
Q ss_conf             3446667734478899988687-7899999998698699999924068780799979999989225
Q gi|254780406|r    5 NIVQENFTPQRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRK   69 (354)
Q Consensus         5 ~~~~~~~~~~RL~K~la~~g~~-SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~   69 (354)
                      ........++||++||+.+++| ||++|++||.+|.|+|||++++.++++|.++|.|+|+++++.+
T Consensus        12 ~~~~~~~~~~RLd~~L~~~~~~~SR~~a~~~I~~G~V~VNg~~v~~~~~~v~~gd~I~i~~~~~~~   77 (79)
T 1p9k_A           12 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV   77 (79)
T ss_dssp             EEECCSCSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTEEEEE
T ss_pred             EEECCCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECCEEEEE
T ss_conf             386499971979999987788368999999998499798999927788798999999999999999