HHsearch alignment of GI: 254780406 and MMDB domain: 1v9f_A_
>1v9f_A (A:) Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli}
Probab=100.00 E-value=7.8e-41 Score=276.59 Aligned_cols=244 Identities=17% Similarity=0.103 Sum_probs=203.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEE-------------
Q ss_conf 986534466677344788999886-877899999998698699999924068780799979999989-------------
Q gi|254780406|r 1 MKDKNIVQENFTPQRVSKVIARAG-IASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVP------------- 66 (354)
Q Consensus 1 ~~~~~~~~~~~~~~RL~K~la~~g-~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~------------- 66 (354)
|+....+.++..++||++||+..+ .|||++++++|++|+|+|||+.+..+...+...+.+.+....
T Consensus 4 ~~~~~~v~~~~~g~rl~~~L~~~~~~~sr~~~~~~i~~G~V~vng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (325)
T 1v9f_A 4 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPL 83 (325)
T ss_dssp ------------------------------------------------------------------------CCCCCCCC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 89999989764886699999986686799999999986998999999178320625898997325433222333344541
Q ss_pred CCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECC------CCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCC--C
Q ss_conf 2255643896027875156314433336442101102------3432002665543323202223676410001234--4
Q gi|254780406|r 67 LRKAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPS------IFSRVISVGRLDINTEGLLLLTNDGGLARVLELP--S 138 (354)
Q Consensus 67 i~~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p--~ 138 (354)
...+++..|+++|||.|+.|+..+.....++...+.. ....+++|||||++||||||||++++++++|..+ .
T Consensus 84 ~il~ed~~~ivvnKP~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~~~~ 163 (325)
T 1v9f_A 84 DIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQR 163 (325)
T ss_dssp CEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHT
T ss_pred CEEEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHC
T ss_conf 12510110578707888654898777888632321134443333342146532588986514664025889999987501
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHCC---------CEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCC
Q ss_conf 574047752112455646788874000008---------76750343036402688079999995184289999999839
Q gi|254780406|r 139 TQWLRVYRVRFHGQVDQDKLNLLKKGIVIQ---------GICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFN 209 (354)
Q Consensus 139 ~~~~k~Y~v~v~~~~~~~~~~~~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g 209 (354)
..+.|+|++.|.|.+..+............ .+......+.+.......+++++.+.|||+||||+||+++|
T Consensus 164 ~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~sl~~~~~~TGR~HQIR~hla~~G 243 (325)
T 1v9f_A 164 REITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 243 (325)
T ss_dssp TCSEEEEEEEEESCCCCCEEEECCEEECSSCTTCEEECTTSBCCEEEEEEEEECSSEEEEEEEESCCCTTHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 21012423430135474566235533576665305876887157899898653388457999977883179999999839
Q ss_pred CEEEEEEEEEECCEECCCCCCCCEEECCHHHHHHH
Q ss_conf 86868897587054518755474886799999875
Q gi|254780406|r 210 WKVNRLIRISYGPFQLGTLLAGSTREVSKKILREQ 244 (354)
Q Consensus 210 ~~V~~L~Rv~~G~~~l~~L~~G~~r~l~~~e~~~l 244 (354)
++|+.+++.++|++.+++|+.|+|++++..+...|
T Consensus 244 ~PIvGD~~Yg~~~~~~~~l~~g~~~~~~~~~~~~L 278 (325)
T 1v9f_A 244 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQAL 278 (325)
T ss_dssp CCBTTCTTTTCCCCCCTTCCHHHHHHHHHCCSCSE
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHH
T ss_conf 97668777898554544331667776515864346