HHsearch alignment of GI: 254780406 and MMDB domain: 2apo_A_51-266
>2apo_A (A:51-266) Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii}
Probab=97.93 E-value=0.00011 Score=48.88 Aligned_cols=156 Identities=16% Similarity=0.085 Sum_probs=94.3
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r 73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ 152 (354)
Q Consensus 73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~ 152 (354)
.-++++|||.|+.++..=...+.. ....++...|.||-..+|+|++--. -+.++..--....|+|.+++.--
T Consensus 16 ~G~l~i~KP~g~tS~~vv~~~k~~------~~~~kvgh~GtLDp~a~GvLiv~ig--~~Tkl~~~~~~~~K~Y~~~~~lG 87 (216)
T 2apo_A 16 YGVVVVDKPRGPTSHEVSTWVKKI------LNLDKAGHGGTLDPKVTGVLPVALE--RATKTIPMWHIPPKEYVCLMHLH 87 (216)
T ss_dssp TEEEEEEECSSSCHHHHHHHHHHH------TTCSCEEESSCCCTTCEEEEEEEEG--GGGGGGGGTTSSCEEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH------HCCCCCCCCCCCCCCCCCCHHHEEC--HHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 998999799989989999999998------4877357787789634365532118--65322177505882799999983
Q ss_pred C--CHHHHHHHHHHHH--------------CCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCC------
Q ss_conf 5--6467888740000--------------08767503430364026880799999951842899999998398------
Q gi|254780406|r 153 V--DQDKLNLLKKGIV--------------IQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNW------ 210 (354)
Q Consensus 153 ~--~~~~~~~~~~g~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~------ 210 (354)
. +.+.++.....+. +.+....-....-..-+.....++|....|-| ||.++..+|.
T Consensus 88 ~~Tdt~di~~~l~~f~g~~~q~pp~~Savk~~g~~ayelar~g~~~~~p~~~~~v~cs~GtY--IRsL~~Dlg~~Lg~~a 165 (216)
T 2apo_A 88 RDASEEDILRVFKEFTGRIYQRPPLKAAVKRRLRIRKIHELELLDKDGKDVLFRVKCQSGTY--IRKLCEDIGEALGTSA 165 (216)
T ss_dssp SCCCHHHHHHHHHHHSEEEECC-----------CEEEEEEEEEEEEETTEEEEEEEECTTCC--HHHHHHHHHHHTTSCE
T ss_pred ECCCCCHHHHHHHHCCCCEEECCCCHHHCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCC--HHHHHHHHHHHCCCCE
T ss_conf 12432149999985376043248614310134445279999986258884899999658816--7999999998605447
Q ss_pred EEEEEEEEEECCEECCCCCCCCEEECCHHHHHHHH
Q ss_conf 68688975870545187554748867999998753
Q gi|254780406|r 211 KVNRLIRISYGPFQLGTLLAGSTREVSKKILREQL 245 (354)
Q Consensus 211 ~V~~L~Rv~~G~~~l~~L~~G~~r~l~~~e~~~l~ 245 (354)
.+..|.|+++|+|.+++- ++-++|.+..
T Consensus 166 ~~~~LrRt~~G~f~~~~a-------~~l~~l~~~~ 193 (216)
T 2apo_A 166 HMQELRRTKSGCFEEKDA-------VYLQDLLDAY 193 (216)
T ss_dssp EEEEEEEEEETTEEGGGC-------BCHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCCC-------CCHHHHHHHH
T ss_conf 883053655699062334-------7899999878