HHsearch alignment of GI: 254780406 and MMDB domain: 2apo_A_51-266

>2apo_A (A:51-266) Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii}
Probab=97.93  E-value=0.00011  Score=48.88  Aligned_cols=156  Identities=16%  Similarity=0.085  Sum_probs=94.3

Q ss_pred             EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r   73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ  152 (354)
Q Consensus        73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~  152 (354)
                      .-++++|||.|+.++..=...+..      ....++...|.||-..+|+|++--.  -+.++..--....|+|.+++.--
T Consensus        16 ~G~l~i~KP~g~tS~~vv~~~k~~------~~~~kvgh~GtLDp~a~GvLiv~ig--~~Tkl~~~~~~~~K~Y~~~~~lG   87 (216)
T 2apo_A           16 YGVVVVDKPRGPTSHEVSTWVKKI------LNLDKAGHGGTLDPKVTGVLPVALE--RATKTIPMWHIPPKEYVCLMHLH   87 (216)
T ss_dssp             TEEEEEEECSSSCHHHHHHHHHHH------TTCSCEEESSCCCTTCEEEEEEEEG--GGGGGGGGTTSSCEEEEEEEEES
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH------HCCCCCCCCCCCCCCCCCCHHHEEC--HHHHHHHHHCCCCCEEEEEEEEE
T ss_conf             998999799989989999999998------4877357787789634365532118--65322177505882799999983


Q ss_pred             C--CHHHHHHHHHHHH--------------CCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCC------
Q ss_conf             5--6467888740000--------------08767503430364026880799999951842899999998398------
Q gi|254780406|r  153 V--DQDKLNLLKKGIV--------------IQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNW------  210 (354)
Q Consensus       153 ~--~~~~~~~~~~g~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~------  210 (354)
                      .  +.+.++.....+.              +.+....-....-..-+.....++|....|-|  ||.++..+|.      
T Consensus        88 ~~Tdt~di~~~l~~f~g~~~q~pp~~Savk~~g~~ayelar~g~~~~~p~~~~~v~cs~GtY--IRsL~~Dlg~~Lg~~a  165 (216)
T 2apo_A           88 RDASEEDILRVFKEFTGRIYQRPPLKAAVKRRLRIRKIHELELLDKDGKDVLFRVKCQSGTY--IRKLCEDIGEALGTSA  165 (216)
T ss_dssp             SCCCHHHHHHHHHHHSEEEECC-----------CEEEEEEEEEEEEETTEEEEEEEECTTCC--HHHHHHHHHHHTTSCE
T ss_pred             ECCCCCHHHHHHHHCCCCEEECCCCHHHCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCC--HHHHHHHHHHHCCCCE
T ss_conf             12432149999985376043248614310134445279999986258884899999658816--7999999998605447


Q ss_pred             EEEEEEEEEECCEECCCCCCCCEEECCHHHHHHHH
Q ss_conf             68688975870545187554748867999998753
Q gi|254780406|r  211 KVNRLIRISYGPFQLGTLLAGSTREVSKKILREQL  245 (354)
Q Consensus       211 ~V~~L~Rv~~G~~~l~~L~~G~~r~l~~~e~~~l~  245 (354)
                      .+..|.|+++|+|.+++-       ++-++|.+..
T Consensus       166 ~~~~LrRt~~G~f~~~~a-------~~l~~l~~~~  193 (216)
T 2apo_A          166 HMQELRRTKSGCFEEKDA-------VYLQDLLDAY  193 (216)
T ss_dssp             EEEEEEEEEETTEEGGGC-------BCHHHHHHHH
T ss_pred             EEEECCCCCCCCCCCCCC-------CCHHHHHHHH
T ss_conf             883053655699062334-------7899999878