HHsearch alignment of GI: 254780406 and MMDB domain: 3dh3_A_64-290
>3dh3_A (A:64-290) Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.97 E-value=1.4e-31 Score=218.34 Aligned_cols=170 Identities=25% Similarity=0.425 Sum_probs=151.1
Q ss_pred CCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 64389602787515631443333644210110234320026655433232022236764100012344574047752112
Q gi|254780406|r 71 ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFH 150 (354)
Q Consensus 71 ~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~ 150 (354)
|+..+|++|||.|+.|+..+.. ..++.+.+... .++++|||||++||||||||+|+++++.|+++...++|+|++.|.
T Consensus 2 Ed~~~ivinKP~Gl~~~~~~~~-~~~l~~~l~~~-~~l~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~i~K~Y~a~v~ 79 (227)
T 3dh3_A 2 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD 79 (227)
T ss_dssp GGCCEEEEEECTTCBCCCCSSC-TTBHHHHHTCS-SCCEESSCCCTTCEEEEEEESCTTHHHHHHCGGGCCCEEEEEEES
T ss_pred CCEEEEECCCCCCEEECCCCCC-CCCCHHHCCCC-CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 3113564366652120333477-77501101344-431224656767631489943987998887631244322112760
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECCCCCC
Q ss_conf 45564678887400000876750343036402688079999995184289999999839868688975870545187554
Q gi|254780406|r 151 GQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLA 230 (354)
Q Consensus 151 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~~L~~ 230 (354)
|.++.+....+..+..........+. ......+|+++.+.+|++||||+||+++|++|+.+.++++|++.|.+|+.
T Consensus 80 G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~tGr~hQIR~h~a~~g~pI~gd~~y~~~~~~l~~l~~ 155 (227)
T 3dh3_A 80 KPITEEFIRGMSAGVPILGTVTKKCK----VKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL 155 (227)
T ss_dssp SCCCHHHHHHHHTCCBCSSSBCCCCE----EEECSSSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECTTCCT
T ss_pred CCCCHHHHHHHHCCCEECCEEEEEEE----EEECCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEEEEEECCEECCCCCC
T ss_conf 57999999999759984565744257----75226725899925885259999999879967669999987877489799
Q ss_pred CCEEECCHHHHHHHHH
Q ss_conf 7488679999987532
Q gi|254780406|r 231 GSTREVSKKILREQLG 246 (354)
Q Consensus 231 G~~r~l~~~e~~~l~~ 246 (354)
|+||+|+..|+..+..
T Consensus 156 g~~r~l~~~e~~~~~~ 171 (227)
T 3dh3_A 156 GEWRDLTDDELIDLFK 171 (227)
T ss_dssp TCEEECCHHHHHHHHH
T ss_pred CCEEECCHHHHHHHHH
T ss_conf 7738899999999998