HHsearch results for GI: 254780406 and protein with PDBid: 1k8w_A
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=98.04 E-value=2.1e-05 Score=52.52 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=89.3
Q ss_pred ECCEECCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99989225564389602787515631443333644210110234320026655433232022236764100012344574
Q gi|254780406|r 62 VDGVPLRKAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQW 141 (354)
Q Consensus 62 vdg~~i~~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~ 141 (354)
+.|+.... .-++++|||.|+.++..=..-+.. -...++...|.||-..+|+|++.-.- +.+|..--...
T Consensus 17 ~~~~~~~~---nG~l~i~Kp~g~tS~~~v~~~r~~------l~~kKvGH~GTLDP~AtGvL~v~~G~--aTKl~~~~~~~ 85 (327)
T 1k8w_A 17 IEGRHMDI---NGVLLLDKPQGMSSNDALQKVKRI------YNANRAGHTGALDPLATGMLPICLGE--ATKFSQYLLDS 85 (327)
T ss_dssp -----CCC---CEEEEEEECTTCCHHHHHHHHHHH------TTCSCEEESSCCCTTCEEEEEEEEGG--GGGGTHHHHTS
T ss_pred CCCCCCCC---CEEEEEECCCCCCHHHHHHHHHHH------HCCCCCCCCCCCCCCCEEEEEEEECH--HHHHHHHHCCC
T ss_conf 45888885---469999689989989999999998------58985877865798560139999787--87488887789
Q ss_pred EEEEEEEECCC-------------------CCHHHHHHHHHHHHCCCEEEECC---------------------------
Q ss_conf 04775211245-------------------56467888740000087675034---------------------------
Q gi|254780406|r 142 LRVYRVRFHGQ-------------------VDQDKLNLLKKGIVIQGICYGDM--------------------------- 175 (354)
Q Consensus 142 ~k~Y~v~v~~~-------------------~~~~~~~~~~~g~~~~~~~~~~~--------------------------- 175 (354)
.|+|.+++.-- ++.+.++.....+.-.-.+..|.
T Consensus 86 ~K~Y~~~~~lG~~TdT~D~~G~i~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~Gkr~Y~lAR~g~~v~~~~r~ 165 (327)
T 1k8w_A 86 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARP 165 (327)
T ss_dssp CEEEEEEEEETEEESSSBTTSCEEEECCCCCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEE
T ss_pred CCCEEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEECCCHHHHHHCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 87328999987757654468967542378511999999999737777874861121000474189999746665568601
Q ss_pred ----CEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf ----3036402688079999995184289999999839------868688975870545187
Q gi|254780406|r 176 ----QVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 176 ----~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~ 227 (354)
.+.+..-+.....++|.-..|-| ||-++.-+| -.+..|.|+++|+|.+++
T Consensus 166 v~I~~i~~~~~~~~~~~~~v~cs~GTY--IRsLa~DiG~~Lg~~a~l~~LrRt~~G~f~~~~ 225 (327)
T 1k8w_A 166 ITVYELLFIRHEGNELELEIHCSKGTY--IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER 225 (327)
T ss_dssp EEEEEEEEEEEETTEEEEEEEECTTCC--HHHHHHHHHHHHTSCEEEEEEEEEEETTCCGGG
T ss_pred EEEEEEEEEECCCCEEEEEEEECCCHH--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHH
T ss_conf 145348997415888999999658369--999999987650894898378988887818121