HHsearch results for GI: 254780406 and protein with PDBid: 1ksk_A
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=100.00 E-value=0 Score=418.48 Aligned_cols=232 Identities=25% Similarity=0.403 Sum_probs=210.2
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCCCCCEEEEECCCCCEEEECCCCC
Q ss_conf 73447889998868778999999986986999999240687807999799999892255643896027875156314433
Q gi|254780406|r 12 TPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAERTRLWLYHKPIGLVTTHSDP 91 (354)
Q Consensus 12 ~~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~~~~~~~~~~~KP~g~~~~~~~~ 91 (354)
+.||||||||++|.||||+|++||++|+|+|||++|++++++|.++|.|.|||+++..+++..||++|||+|++|+..+.
T Consensus 2 ~~iRLdk~Ls~~~~~SR~~a~~lI~~G~V~VNg~~v~~~~~~V~~~d~I~v~~~~i~~~~~~~~ivlnKP~G~~~~~~~~ 81 (234)
T 1ksk_A 2 SHMRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDP 81 (234)
T ss_dssp CCEEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTEEECCCCCCCEEEEEECTTCBSSSSCS
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHCCEEEECCEECCCCCCCCCCCCEEEECCCEEEECCCCEEEEEECCCCCCCCCCCC
T ss_conf 75229999987789689999999988959999999567885817766688503145204574799998999867666455
Q ss_pred CCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 33644210110234320026655433232022236764100012344574047752112455646788874000008767
Q gi|254780406|r 92 DGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGIC 171 (354)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~~~~~~~~~~g~~~~~~~ 171 (354)
....++.........++++|||||++||||||||||+++++.|++|..+++++|++.|.++++.+.+..+..|+.+++..
T Consensus 82 ~~~~~~~~l~~~~~~~~~~V~RLD~dTsGLll~t~d~~~~~~l~~~~~~i~k~Y~~~v~g~~~~~~~~~l~~~v~~~~~~ 161 (234)
T 1ksk_A 82 DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK 161 (234)
T ss_dssp SSCBGGGGCCCTTGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEESSCCCTTHHHHHHHCCCCTTCS
T ss_pred CCCEEEECCCCCCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHEEEEECCCE
T ss_conf 43144301345445507650225888865487505867888775552288579960557888776754542156757955
Q ss_pred EECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEEC-CCCCCCCEEECCHHHHHHHH
Q ss_conf 503430364026880799999951842899999998398686889758705451-87554748867999998753
Q gi|254780406|r 172 YGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQL-GTLLAGSTREVSKKILREQL 245 (354)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l-~~L~~G~~r~l~~~e~~~l~ 245 (354)
.......+... .++|++|+|.|||+||||+||+++||+|.+|+|++||+++| ++|++|+||+||++||..|+
T Consensus 162 ~~~~~~~~~~~--~~~~l~i~l~tGR~hQIR~h~~~~G~pV~~L~Ri~~G~~~L~~~L~~G~~r~Lt~~Ei~~l~ 234 (234)
T 1ksk_A 162 DLTKPAVLEVI--TPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 234 (234)
T ss_dssp SCCCCCEEEEE--ETTEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECCTTCCTTCEEECCHHHHTTCC
T ss_pred EEEEEEEEECC--CCCEEEEEEECCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCEEECCHHHHHHHC
T ss_conf 45656785215--99589999824973899999998699798999999876614898999653799999999659