HHsearch results for GI: 254780406 and protein with PDBid: 1r3e_A
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase/RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=98.05 E-value=5.3e-05 Score=49.95 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=95.3
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC-
Q ss_conf 3896027875156314433336442101102343200266554332320222367641000123445740477521124-
Q gi|254780406|r 73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG- 151 (354)
Q Consensus 73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~- 151 (354)
.-++++|||.|+.++..=..-+.. + ...++...|.||-..+|+|++.-.. +.++..--....|+|.+++.-
T Consensus 3 nG~l~v~KP~g~tS~~vv~~vr~~----l--~~kkvGH~GTLDP~AtGvL~i~~g~--aTk~~~~~~~~~K~Y~~~~~lG 74 (309)
T 1r3e_A 3 HGILVAYKPKGPTSHDVVDEVRKK----L--KTRKVGHGGTLDPFACGVLIIGVNQ--GTRILEFYKDLKKVYWVKMRLG 74 (309)
T ss_dssp CEEEEEEECSSSCHHHHHHHHHHH----T--TCSCEEESSCCCTTCEEEEEEEEGG--GGGGGGGGTTSCEEEEEEEEET
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCEEEEEEEECH--HHHHHHHHHHCCCEEEEEEEEE
T ss_conf 669999779989989999999998----6--8897876856797461379999887--7624477612275547999993
Q ss_pred ------------------CCCHHHHHHHHHHH--------------HCCCEE-----------------EECCCEEEEEC
Q ss_conf ------------------55646788874000--------------008767-----------------50343036402
Q gi|254780406|r 152 ------------------QVDQDKLNLLKKGI--------------VIQGIC-----------------YGDMQVTLDTQ 182 (354)
Q Consensus 152 ------------------~~~~~~~~~~~~g~--------------~~~~~~-----------------~~~~~~~~~~~ 182 (354)
.++.+.+......+ .+.+.. +....+.+..-
T Consensus 75 ~~TdT~D~~G~v~~~~~~~~~~~~i~~~l~~f~G~~~Q~PP~ySAvKv~Gkr~Y~lAR~g~~~~~~~r~v~i~~~~~~~~ 154 (309)
T 1r3e_A 75 LITETFDITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNI 154 (309)
T ss_dssp EEESSSBTTSCEEEECCCCCCHHHHHHHHHSSSEEEEECCCSSSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEE
T ss_pred EECCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEEEEEEECC
T ss_conf 42367687887764146665499999999963160200684667643266312368765876567764699999876044
Q ss_pred CCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC-CCCCCEEECCHHHHHHHHH
Q ss_conf 688079999995184289999999839------868688975870545187-5547488679999987532
Q gi|254780406|r 183 KGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT-LLAGSTREVSKKILREQLG 246 (354)
Q Consensus 183 ~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~-L~~G~~r~l~~~e~~~l~~ 246 (354)
......++|.-..|-| ||-+..-+| -.+..|.|+++|+|.+.+ +..-+ +..+++...+-
T Consensus 155 ~~~~~~~~v~cs~GTY--IRsL~~dig~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~---~~~~~~~~~l~ 220 (309)
T 1r3e_A 155 EGRDVSFRVEVSPGTY--IRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFE---AAPEEIENRII 220 (309)
T ss_dssp ETTEEEEEEEECTTCC--HHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBCTTT---SCHHHHHHHCE
T ss_pred CCCEEEEEEEECCCCC--HHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHCCHHH---HCHHHCCCCCC
T ss_conf 4426999999899837--999999997751995898158980578954677447988---58233156324