HHsearch results for GI: 254780406 and protein with PDBid: 1v9f_A

>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=99.97  E-value=2.1e-33  Score=228.89  Aligned_cols=215  Identities=20%  Similarity=0.188  Sum_probs=168.1

Q ss_pred             CCCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEEC-------------CCCC
Q ss_conf             4466677344788999886-8778999999986986999999240687807999799999892-------------2556
Q gi|254780406|r    6 IVQENFTPQRVSKVIARAG-IASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPL-------------RKAE   71 (354)
Q Consensus         6 ~~~~~~~~~RL~K~la~~g-~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i-------------~~~~   71 (354)
                      .++++..++||++||+... ..||+.++++|+.|.|+|||++++.++++|..+|.|.++....             ..++
T Consensus         9 tV~~~~~G~RLD~~L~~~~~~~sr~~i~k~i~~g~V~vNg~~~~k~~~~l~~gD~I~i~~~~~~~~~~~~~~~~~~ilye   88 (325)
T 1v9f_A            9 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYE   88 (325)
T ss_dssp             -------------------------------------------------------------------CCCCCCCCCEEEE
T ss_pred             EECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf             98977588679999998668779999999998699899999937854165699999982676665446755688607996


Q ss_pred             CEEEEECCCCCEEEECCCCCCCCCCCCEEECCC------CCCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCEE
Q ss_conf             438960278751563144333364421011023------43200266554332320222367641000123--4457404
Q gi|254780406|r   72 RTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSI------FSRVISVGRLDINTEGLLLLTNDGGLARVLEL--PSTQWLR  143 (354)
Q Consensus        72 ~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~~~~~k  143 (354)
                      +..++++|||.|+.|+........++.+.+...      ...+++|+|||++|||||||+.+.+.+..|..  ....+.|
T Consensus        89 d~~~ivvnKP~Gl~~~p~~~~~~~tl~~~~~~~~~~~~~~~~~~~vHRLDr~TSGlll~Ak~~~~~~~l~~~f~~~~v~K  168 (325)
T 1v9f_A           89 DEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITR  168 (325)
T ss_dssp             CSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEE
T ss_pred             ECCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHCEEEE
T ss_conf             08899998999872589999888749999998634313776521665789887426997400057899988764070205


Q ss_pred             EEEEEECCCCCHHHHHHH---------HHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEE
Q ss_conf             775211245564678887---------40000087675034303640268807999999518428999999983986868
Q gi|254780406|r  144 VYRVRFHGQVDQDKLNLL---------KKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNR  214 (354)
Q Consensus       144 ~Y~v~v~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~  214 (354)
                      +|++.|.|.+........         .......++......+.+.......+++++.+.+||+||||.+|+++|++|  
T Consensus       169 ~Y~A~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~gk~a~T~~~~~~~~~~~slv~~~~~TGRtHQIRvHla~lG~PI--  246 (325)
T 1v9f_A          169 EYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL--  246 (325)
T ss_dssp             EEEEEEESCCCCCEEEECCEEECSSCTTCEEECTTSBCCEEEEEEEEECSSEEEEEEEESCCCTTHHHHHHHHTTCCB--
T ss_pred             EEEEEEECCCCCCCCEECCCCCCCCCCCEEEECCCCEEEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCE--
T ss_conf             899999764276650504432377776279978898035899997442388446899978888679999999859937--


Q ss_pred             EEEEEECC
Q ss_conf             89758705
Q gi|254780406|r  215 LIRISYGP  222 (354)
Q Consensus       215 L~Rv~~G~  222 (354)
                      |.-..||.
T Consensus       247 lGD~~YG~  254 (325)
T 1v9f_A          247 VGDPVYGG  254 (325)
T ss_dssp             TTCTTTTC
T ss_pred             ECCCCCCC
T ss_conf             58613487