HHsearch results for GI: 254780406 and protein with PDBid: 1v9f_A
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=99.97 E-value=2.1e-33 Score=228.89 Aligned_cols=215 Identities=20% Similarity=0.188 Sum_probs=168.1
Q ss_pred CCCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEEC-------------CCCC
Q ss_conf 4466677344788999886-8778999999986986999999240687807999799999892-------------2556
Q gi|254780406|r 6 IVQENFTPQRVSKVIARAG-IASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPL-------------RKAE 71 (354)
Q Consensus 6 ~~~~~~~~~RL~K~la~~g-~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i-------------~~~~ 71 (354)
.++++..++||++||+... ..||+.++++|+.|.|+|||++++.++++|..+|.|.++.... ..++
T Consensus 9 tV~~~~~G~RLD~~L~~~~~~~sr~~i~k~i~~g~V~vNg~~~~k~~~~l~~gD~I~i~~~~~~~~~~~~~~~~~~ilye 88 (325)
T 1v9f_A 9 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYE 88 (325)
T ss_dssp -------------------------------------------------------------------CCCCCCCCCEEEE
T ss_pred EECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf 98977588679999998668779999999998699899999937854165699999982676665446755688607996
Q ss_pred CEEEEECCCCCEEEECCCCCCCCCCCCEEECCC------CCCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCEE
Q ss_conf 438960278751563144333364421011023------43200266554332320222367641000123--4457404
Q gi|254780406|r 72 RTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSI------FSRVISVGRLDINTEGLLLLTNDGGLARVLEL--PSTQWLR 143 (354)
Q Consensus 72 ~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~~~~~k 143 (354)
+..++++|||.|+.|+........++.+.+... ...+++|+|||++|||||||+.+.+.+..|.. ....+.|
T Consensus 89 d~~~ivvnKP~Gl~~~p~~~~~~~tl~~~~~~~~~~~~~~~~~~~vHRLDr~TSGlll~Ak~~~~~~~l~~~f~~~~v~K 168 (325)
T 1v9f_A 89 DEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITR 168 (325)
T ss_dssp CSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEE
T ss_pred ECCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHCEEEE
T ss_conf 08899998999872589999888749999998634313776521665789887426997400057899988764070205
Q ss_pred EEEEEECCCCCHHHHHHH---------HHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEE
Q ss_conf 775211245564678887---------40000087675034303640268807999999518428999999983986868
Q gi|254780406|r 144 VYRVRFHGQVDQDKLNLL---------KKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNR 214 (354)
Q Consensus 144 ~Y~v~v~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~ 214 (354)
+|++.|.|.+........ .......++......+.+.......+++++.+.+||+||||.+|+++|++|
T Consensus 169 ~Y~A~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~gk~a~T~~~~~~~~~~~slv~~~~~TGRtHQIRvHla~lG~PI-- 246 (325)
T 1v9f_A 169 EYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL-- 246 (325)
T ss_dssp EEEEEEESCCCCCEEEECCEEECSSCTTCEEECTTSBCCEEEEEEEEECSSEEEEEEEESCCCTTHHHHHHHHTTCCB--
T ss_pred EEEEEEECCCCCCCCEECCCCCCCCCCCEEEECCCCEEEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCE--
T ss_conf 899999764276650504432377776279978898035899997442388446899978888679999999859937--
Q ss_pred EEEEEECC
Q ss_conf 89758705
Q gi|254780406|r 215 LIRISYGP 222 (354)
Q Consensus 215 L~Rv~~G~ 222 (354)
|.-..||.
T Consensus 247 lGD~~YG~ 254 (325)
T 1v9f_A 247 VGDPVYGG 254 (325)
T ss_dssp TTCTTTTC
T ss_pred ECCCCCCC
T ss_conf 58613487