HHsearch results for GI: 254780406 and protein with PDBid: 1vio_A
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=100.00 E-value=0 Score=373.45 Aligned_cols=232 Identities=25% Similarity=0.388 Sum_probs=207.6
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCCCCCEEEEECCCCCEEEECCCCCC
Q ss_conf 34478899988687789999999869869999992406878079997999998922556438960278751563144333
Q gi|254780406|r 13 PQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAERTRLWLYHKPIGLVTTHSDPD 92 (354)
Q Consensus 13 ~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~~~~~~~~~~~KP~g~~~~~~~~~ 92 (354)
.||||||||..+.|||++|+++|++|+|+|||++|+.++++|.++|.|.++++++...++..|+++|||+|++|+.....
T Consensus 2 ~mRLdkfLs~~~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~~d~V~~~~~~i~~~e~~~~~vvnKP~G~~~~~~~~~ 81 (243)
T 1vio_A 2 SLRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQGCVCSNDDGD 81 (243)
T ss_dssp CEEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTEECCSSCCCCEEEEEECTTCBSSCCC--
T ss_pred CHHHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCCEEEEECCCEEEEEECCCCCCCCCCCCC
T ss_conf 56899999987785899999999789099999990549968488787995486577603514999977998511123322
Q ss_pred CCCCCCEEECC-CCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 36442101102-34320026655433232022236764100012344574047752112455646788874000008767
Q gi|254780406|r 93 GRSTVFDNLPS-IFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGIC 171 (354)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~~~~~~~~~~g~~~~~~~ 171 (354)
..++++.+.. ...++++|||||++||||||||+|+.+++.++.+..+++++|.|+|.+++..+.+..+..++.+++..
T Consensus 82 -~~~v~~~~~~~~~~~~~~VhRLDr~TSGlll~ak~~~~~~~~~~~~~~~~~~y~v~v~~~~~~~~~~~l~~~v~~~g~~ 160 (243)
T 1vio_A 82 -YPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEK 160 (243)
T ss_dssp -CCBGGGGSCTTGGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEESSCCCTTHHHHHHHCCCCTTCS
T ss_pred -CEEEEEECCCCCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHCCEEECCCC
T ss_conf -2048761244557856354445888787065502846633221120387289999995355166899985545607902
Q ss_pred EECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECC-CCCCCCEEECCHHHHHHHHHH
Q ss_conf 5034303640268807999999518428999999983986868897587054518-755474886799999875321
Q gi|254780406|r 172 YGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLG-TLLAGSTREVSKKILREQLGP 247 (354)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~-~L~~G~~r~l~~~e~~~l~~~ 247 (354)
.......+. ....+|++|+|.|||+||||+||+++|++|++|+|++||++.|+ +|++|+||+|++.||..|+..
T Consensus 161 ~~~~~~~~~--~~~~~~l~v~l~TGRtHQIR~hl~~lG~PIi~l~Ri~~g~~~l~~~L~~G~~r~l~~~Ei~~l~~~ 235 (243)
T 1vio_A 161 EPTKPAKLE--ILDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLVEG 235 (243)
T ss_dssp SCCCCCEEE--ECSSSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECCTTCCTTCEEECCHHHHHHTC--
T ss_pred CEEEEEEEE--CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHC
T ss_conf 206888763--168836999857896459999999869969798999989744699999976369999999999857