HHsearch results for GI: 254780406 and protein with PDBid: 1vio_A

>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=100.00  E-value=0  Score=373.45  Aligned_cols=232  Identities=25%  Similarity=0.388  Sum_probs=207.6

Q ss_pred             CHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCCCCCEEEEECCCCCEEEECCCCCC
Q ss_conf             34478899988687789999999869869999992406878079997999998922556438960278751563144333
Q gi|254780406|r   13 PQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAERTRLWLYHKPIGLVTTHSDPD   92 (354)
Q Consensus        13 ~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~~~~~~~~~~~KP~g~~~~~~~~~   92 (354)
                      .||||||||..+.|||++|+++|++|+|+|||++|+.++++|.++|.|.++++++...++..|+++|||+|++|+.....
T Consensus         2 ~mRLdkfLs~~~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~~d~V~~~~~~i~~~e~~~~~vvnKP~G~~~~~~~~~   81 (243)
T 1vio_A            2 SLRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQGCVCSNDDGD   81 (243)
T ss_dssp             CEEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTEECCSSCCCCEEEEEECTTCBSSCCC--
T ss_pred             CHHHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCCEEEEECCCEEEEEECCCCCCCCCCCCC
T ss_conf             56899999987785899999999789099999990549968488787995486577603514999977998511123322


Q ss_pred             CCCCCCEEECC-CCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             36442101102-34320026655433232022236764100012344574047752112455646788874000008767
Q gi|254780406|r   93 GRSTVFDNLPS-IFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGIC  171 (354)
Q Consensus        93 ~~~~~~~~~~~-~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~~~~~~~~~~g~~~~~~~  171 (354)
                       ..++++.+.. ...++++|||||++||||||||+|+.+++.++.+..+++++|.|+|.+++..+.+..+..++.+++..
T Consensus        82 -~~~v~~~~~~~~~~~~~~VhRLDr~TSGlll~ak~~~~~~~~~~~~~~~~~~y~v~v~~~~~~~~~~~l~~~v~~~g~~  160 (243)
T 1vio_A           82 -YPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEK  160 (243)
T ss_dssp             -CCBGGGGSCTTGGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEESSCCCTTHHHHHHHCCCCTTCS
T ss_pred             -CEEEEEECCCCCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHCCEEECCCC
T ss_conf             -2048761244557856354445888787065502846633221120387289999995355166899985545607902


Q ss_pred             EECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECC-CCCCCCEEECCHHHHHHHHHH
Q ss_conf             5034303640268807999999518428999999983986868897587054518-755474886799999875321
Q gi|254780406|r  172 YGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLG-TLLAGSTREVSKKILREQLGP  247 (354)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~-~L~~G~~r~l~~~e~~~l~~~  247 (354)
                      .......+.  ....+|++|+|.|||+||||+||+++|++|++|+|++||++.|+ +|++|+||+|++.||..|+..
T Consensus       161 ~~~~~~~~~--~~~~~~l~v~l~TGRtHQIR~hl~~lG~PIi~l~Ri~~g~~~l~~~L~~G~~r~l~~~Ei~~l~~~  235 (243)
T 1vio_A          161 EPTKPAKLE--ILDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLVEG  235 (243)
T ss_dssp             SCCCCCEEE--ECSSSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECCTTCCTTCEEECCHHHHHHTC--
T ss_pred             CEEEEEEEE--CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHC
T ss_conf             206888763--168836999857896459999999869969798999989744699999976369999999999857