HHsearch results for GI: 254780406 and protein with PDBid: 2gml_A
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=100.00 E-value=0 Score=352.97 Aligned_cols=174 Identities=24% Similarity=0.394 Sum_probs=160.6
Q ss_pred CCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 56438960278751563144333364421011023432002665543323202223676410001234457404775211
Q gi|254780406|r 70 AERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRF 149 (354)
Q Consensus 70 ~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v 149 (354)
-.+..||+||||+|++||..|+. +++++++++. ..++++|||||+||||||||||||+|+++|+||+++|+|+|+|+|
T Consensus 11 g~D~vyillNKP~G~v~t~~d~~-r~tv~dll~~-~~rl~~VGRLD~dtsGLLLlTnDg~l~~~L~~p~~~i~K~Y~v~v 88 (237)
T 2gml_A 11 GSDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTV 88 (237)
T ss_dssp --CCCEEEEEECTTCBCCSSSSC-SSBHHHHSCC-SSCCEEESCCCTTCEEEEEEESCHHHHHHHHHHHHHSCEEEEEEE
T ss_pred CCCEEEEEEECCCCEEECCCCCC-CCCCHHHCCC-CCCEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 75139999989997696558999-9971653366-455314046788887748994687798986289876516998885
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECCCCC
Q ss_conf 24556467888740000087675034303640268807999999518428999999983986868897587054518755
Q gi|254780406|r 150 HGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLL 229 (354)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~~L~ 229 (354)
+++++++.+..|..|+.++++.+.++.+... .++|++|+|.||+|||||+||+++|++|++|+||+||+|.|++|+
T Consensus 89 ~g~i~~~~l~~l~~Gv~l~~~~~~~~~~~~~----~~~~~~i~l~eGrnrqIRrm~~~lG~~V~~L~Ri~iG~l~L~~L~ 164 (237)
T 2gml_A 89 DKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIP 164 (237)
T ss_dssp SSCCCHHHHHHHSSCCEETTEECCCCEEEEE----ETTEEEEEECCCSTTHHHHHHHHTTCCEEEEEEEEETTEECTTCC
T ss_pred CCCCCHHHHHHHHCCCEECCEEEECCCCCCC----CCEEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCEECCCCC
T ss_conf 3689999999998298531225001001356----764999996678779999999987997858899998998868989
Q ss_pred CCCEEECCHHHHHHHHHHHH
Q ss_conf 47488679999987532100
Q gi|254780406|r 230 AGSTREVSKKILREQLGPHL 249 (354)
Q Consensus 230 ~G~~r~l~~~e~~~l~~~~~ 249 (354)
+|+||+|+++||..|+.+..
T Consensus 165 ~G~~r~L~~~Ei~~L~~~~~ 184 (237)
T 2gml_A 165 LGEWRDLTDDELIDLFKLIE 184 (237)
T ss_dssp TTCEEECCHHHHHHHHTTST
T ss_pred CCCEEECCHHHHHHHHHHHH
T ss_conf 97738999999999998764