HHSEARCH alignment of GI: 254780406 and SCOP domain: d1kska4

Alignment

Probab=100.00  E-value=0  Score=310.78  Aligned_cols=171  Identities=24%  Similarity=0.402  Sum_probs=150.0

Q ss_pred             EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r   73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ  152 (354)
Q Consensus        73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~  152 (354)
                      ++||++|||+|++||..|+.++.++.........++++|||||+||||||||||||+|+++|+||.++++++|.|+|+++
T Consensus         1 p~yi~lNKP~G~l~s~~~~~~~~~~~~l~~~~~~~l~~vgRLD~~tsGLlL~tndg~~~~~l~~~~~~i~k~Y~v~v~~~   80 (172)
T d1kska4           1 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESP   80 (172)
T ss_dssp             CCEEEEEECTTCBSSSSCSSSCBGGGGCCCTTGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEESSC
T ss_pred             CEEEEEECCCCEEECCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCEEEECCCCEEEEECCCCCCCCEEEEEEEECC
T ss_conf             98999989997897973989993788657523676789613786003639990456415431122324627999998226


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEEC-CCCCCC
Q ss_conf             5646788874000008767503430364026880799999951842899999998398686889758705451-875547
Q gi|254780406|r  153 VDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQL-GTLLAG  231 (354)
Q Consensus       153 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l-~~L~~G  231 (354)
                      ++.+.+.+++.|+.+++.......+.+...  ..+|++|+|.||||||||+||+++|++|.+|+||+||+|+| ++|++|
T Consensus        81 i~~~~~~~l~~gv~i~~~~~~~~~~~v~~~--~~~~l~i~l~~Gr~~qIR~~~~~lg~~V~~L~Rv~~G~~~L~~~L~~G  158 (172)
T d1kska4          81 VADDTAEQFAKGVQLHNEKDLTKPAVLEVI--TPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPG  158 (172)
T ss_dssp             CCTTHHHHHHHCCCCTTCSSCCCCCEEEEE--ETTEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECCTTCCTT
T ss_pred             CCHHHHHHHHCCEEECCCCCCCCCEEEEEC--CCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCC
T ss_conf             897898886365577685111152588514--675999999448538999999975988949999998368048988998


Q ss_pred             CEEECCHHHHHHHH
Q ss_conf             48867999998753
Q gi|254780406|r  232 STREVSKKILREQL  245 (354)
Q Consensus       232 ~~r~l~~~e~~~l~  245 (354)
                      +||+|+++||..|+
T Consensus       159 ~~r~L~~~Ei~~l~  172 (172)
T d1kska4         159 EYRPLTEEEIASVV  172 (172)
T ss_dssp             CEEECCHHHHTTCC
T ss_pred             CEEECCHHHHHHHC
T ss_conf             75899999999659

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase RsuA/RluD
domain: Ribosomal small subunit pseudouridine 516 synthase RsuA
species: Escherichia coli [TaxId: 562]