HHSEARCH alignment of GI: 254780406 and SCOP domain: d1sgva2

Alignment
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.67  E-value=6.9e-05  Score=47.72  Aligned_cols=146  Identities=17%  Similarity=0.195  Sum_probs=82.7

Q ss_pred             EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r   73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ  152 (354)
Q Consensus        73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~  152 (354)
                      .-++++|||.|+.++..=..-+..    +  ...++...|.||-..+|+|++.-. + +.++..--....|+|.+++.--
T Consensus         4 ~G~l~v~KP~G~TS~~~v~~vk~~----~--~~kKvGh~GTLDP~AtGvL~i~ig-~-aTK~~~~~~~~~K~Y~~~~~lG   75 (233)
T d1sgva2           4 PGIVVIDKPAGMTSHDVVGRCRRI----F--ATRRVGHAGTLDPMATGVLVIGIE-R-ATKILGLLTAAPKSYAATIRLG   75 (233)
T ss_dssp             SEEEEEEECTTCCHHHHHHHHHHH----T--TCSCEEESSCCCTTCEEEEEEEEG-G-GGGGGGGTTTSCEEEEEEEEET
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCEEEEEEEEC-H-HHHHHHHHCCCCEEEEEEEEEC
T ss_conf             779999769989989999999998----5--868466686789765335899864-6-6542213136754899999976


Q ss_pred             --------------------CCHHHHHHHHHHHH--------------CCCEEE--------------ECCCE---EEEE
Q ss_conf             --------------------56467888740000--------------087675--------------03430---3640
Q gi|254780406|r  153 --------------------VDQDKLNLLKKGIV--------------IQGICY--------------GDMQV---TLDT  181 (354)
Q Consensus       153 --------------------~~~~~~~~~~~g~~--------------~~~~~~--------------~~~~~---~~~~  181 (354)
                                          ++.+.++.....+.              +++...              ++..+   .+..
T Consensus        76 ~~TdT~D~~G~vi~~~~~~~~t~~~i~~~l~~f~G~~~Q~PP~ySAvKv~GkraYelAR~G~~~~~~~r~v~I~~~~l~~  155 (233)
T d1sgva2          76 QTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLA  155 (233)
T ss_dssp             EEETTSBTTSCEEEECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEEEE
T ss_pred             CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEE
T ss_conf             66566443431012312452529999999986177178606287875605768999987177654443420123677874


Q ss_pred             C--CCC--EEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCCC
Q ss_conf             2--688--079999995184289999999839------8686889758705451875
Q gi|254780406|r  182 Q--KGS--NAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGTL  228 (354)
Q Consensus       182 ~--~~~--~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~L  228 (354)
                      -  ...  ...++|.-..|-  .||.+...+|      -.+..|.|+++|+|.+++.
T Consensus       156 ~~~~~~~~~~~~~v~Cs~GT--YIRsLa~DiG~~Lg~~A~l~~LrRt~~G~F~~~~a  210 (233)
T d1sgva2         156 ARRRDQLIDIDVEIDCSSGT--YIRALARDLGDALGVGGHVTALRRTRVGRFELDQA  210 (233)
T ss_dssp             EEEETTEEEEEEEEEESCCT--THHHHHHHHHHHHTSCEEEEEEEEEEETTEEGGGC
T ss_pred             ECCCCCCEEEEEEEEECCHH--HHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHC
T ss_conf             03677754799999989556--99999999999829958987869656867887985


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase II TruB
domain: Pseudouridine synthase II TruB
species: Mycobacterium tuberculosis [TaxId: 1773]